Starting from marker gene abundance data (OTU/ASV table, BIOM file, mothur output)
Visually exploring your 16S rRNA data with a public data in a 3D PCoA plot
Starting from gene list or gene abundance data annotated by KO, EC or COG
Starting with a list of taxa of interest (strains, species or higher level taxa)

News & Updates

  • Detailed guidance on MicrobiomeAnalyst is now available on Nature Protocols;
  • Enhanced error message for handling user input (11/16/2020) ;
  • Fixed several issues associated with the new R version (09/24/2020) ;
  • Updated R from 3.6.2 to 4.0.2 (09/15/2020) ;
  • Updated Java to version 11 and Primefaces to 8.0 (04/08/2020)
  • Fixed issues when uploading SILVA taxonomy (04/25/2020);
  • Enhanced correlation network visualization to display abundance piechart (02/12/2020);
  • Updated graph summary for Correlation network, and added SparCC correlation in Pattern Hunter (02/03/2020);
  • Code refactoring for better performance (01/08/2020);
Read more ......

Please Cite

  • Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols (DOI: 10.1038/s41596-019-0264-1)
  • Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data"
    Nucleic Acids Research 45 W180-188 (DOI: 10.1093/nar/gkx295)

Acknowledgements

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