MicrobiomeAnalyst

Marker Data Profiling
(MDP)

Uploading 16S rRNA marker gene counts data

Shotgun Data Profiling
(SDP)

Uploading shotgun metagenomics counts data

Taxon Set Analysis
(TSA)

Uploading a list of taxonomy names of interest

Projection with Public Data
(PPD)

Co-analysis of a 16S rRNA data with a public data

News & Updates

Detailed guidance on using MicrobiomeAnalyst is available on Nature Protocols;
Interface update and system upgrade (05/13/2022); ;
Added the support to adjust font size for heatmap visualization (03/02/2022); ;
Fixed the issue with Heat Tree and Correction Network analysis introduced after R package updates (02/09/2022); ;
Fixed the issue with reading abundance table containing empty columns (01/28/2022) ;
Upgraded to PrimeFaces 11 (12/20/2021) ;
Fixed the issue in group-level stacked barplot in Abundance Profiling (10/18/2021)
Added support to switch the direction of comparison in heat tree analysis (08/31/2021);
Fixed some minor issues based on user comments (06/01/2021);

Read more ......

Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols 15, 799–821 (DOI: 10.1038/s41596-019-0264-1)
Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data" Nucleic Acids Research 45, W180-188 (DOI: 10.1093/nar/gkx295)