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| Starting from marker gene abundance data (OTU/ASV table, BIOM file, mothur output) |
| Visually exploring your 16S rRNA data with a public data in a 3D PCoA plot |
| Starting from gene list or gene abundance data annotated by KO, EC or COG |
| Starting with a list of taxa of interest (strains, species or higher level taxa) |
MDP
Marker Data Profiling (MDP): Comprehensive composition & diversity analysis
supporting various methods of data overview, alpha diversity and beta-diversity; comparative analysis
supporting multiple differential abundance methods (metagenomeSeq, LEfSe, edgeR, DESeq2, etc.); as well as
prediction of metabolic potentials.
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SDP
Shotgun Data Profiling (SDP): Functional diversity profiling
based on KEGG annotations (modules, pathways, metabolisms), EC numbers, or COG categories, direct functional association testing, as well as differential
abundance analysis followed by functional enrichment analysis within a powerful metabolic network visualization system.
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TSEA
Taxon Set Enrichment Analysis (TSEA): Enrichment analysis using ~2400 manually collected taxon sets organized into 11 different categories. They are defined based on their shared phenotypic traits or ecological niches,
or their associations with host genetic variations, lifestyles, biochemistry, diseases, developmental stages, etc.
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PPD
Projection with Public Data (PPD): Co-processing your data together with a suitable public 16S rRNA data of interest
and explore the results within an interactive 3D PCoA visualization system to easily
discover patterns of interest as well as to associate these patterns with
underlying taxonomic variations.
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News & Updates |
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