MicrobiomeAnalyst

Marker Data Profiling

Analyze marker gene counts data

Shotgun Data Profiling

Analyze shotgun metagenomics data

Taxon Set Analysis

Discover enriched microbial signatures

Microbiome Metabolomics

Co-analyze microbiome & metabolomics data

Statistical Meta-analysis

Integrate multiple marker gene data

Raw Data Processing

Convert raw 16S reads to ASV table

News & Updates

Releasing MicrobiomeAnalyst 2.0 with three new modules coupled with many enhanced features in the existing modules!
Added support for both 2012 version and 2013 version of Greengene database for PiCRUST (01/26/2023); ;
Updated KEGG global network for improved visualization and coverage (01/23/2023); ;
Added support for Sparse Estimation of Correlations among Microbiomes (SECOM) method in taxa correlation analysis (01/12/2023); ;
Minor bug fixes based on user feedback (12/27/2022); ;
Enhanced error messages when users upload normalized data instead of raw count table (12/22/2022); ;
Expanded our taxon set libraries to include >5000 taxon sets covering seven themes (12/18/2022); ;
Users can perform multi-factor association analysis based on MaAsLin2 (12/15/2022); ;
Added Metadata Editor (in Data Integrity Check page) to better support continuous metadata and covariate adjustment (12/05/2022); ;
Added support for interactive stacked bar/area plot - click-and-drag to zoom and mouse-over for details (11/25/2022);
Added support for Tax4Fun 2.0 for predicting functional profiles directly from 16S rRNA sequence data (11/15/2022);

Read more ......

Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols 15, 799–821 (DOI: 10.1038/s41596-019-0264-1)
Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data" Nucleic Acids Research 45, W180-188 (DOI: 10.1093/nar/gkx295)