MicrobiomeAnalyst

Marker Data Profiling
(MDP)

Uploading 16S rRNA marker gene counts data

Shotgun Data Profiling
(SDP)

Uploading shotgun metagenomics counts data

Taxon Set Analysis
(TSA)

Uploading a list of taxonomy names of interest

Projection with Public Data
(PPD)

Co-analysis of a 16S rRNA data with a public data

News & Updates

Detailed guidance on using MicrobiomeAnalyst is available on Nature Protocols;
Please reach us through our OmicsForum to ask questions or request features regarding MicrobiomeAnalyst.
Added support for downloading library sizes as a csv table (09/28/2022); ;
Enhanced message for metadata filtering (08/29/2022); ;
Fixed the taxonomy name issue when the input containing empty columns (07/29/2022); ;
Fixed the issue with heattree plot (07/13/2022); ;
Fixed the issue with parsing the "kingdom" column in the taxonomy table (06/29/2022); ;
Fixed the issue with PERMANOVA based on adonis2 (05/28/2022); ;
Interface enhancement and upgraded R to 4.1.3 (05/13/2022); ;

Read more ......

Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols 15, 799–821 (DOI: 10.1038/s41596-019-0264-1)
Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data" Nucleic Acids Research 45, W180-188 (DOI: 10.1093/nar/gkx295)