Starting from marker gene abundance data (OTU/ASV table, BIOM file, mothur output)
Visually exploring your 16S rRNA data with a public data in a 3D PCoA plot
Starting from gene list or gene abundance data annotated by KO, EC or COG
Starting with a list of taxa of interest (strains, species or higher level taxa)

News & Updates

  • Detailed guidance on using MicrobiomeAnalyst is now available on Nature Protocols;
  • Added support to switch the direction of comparison in heat tree analysis (08/31/2021) ;
  • Fixed some minor issues based on user comments (06/01/2021) ;
  • Bug fix for box plot at log scale (05/20/2021) ;
  • The web framework has been upgraded to PrimeFaces 10.0 (05/07/2021) ;
  • Fixed the issue with mouse clicking on node in SparCC correlation network (02/16/2021) ;
  • Bug fixing color palettes in Stacked Bar/Area Plots (01/11/2021);
  • Updated the KEGG global map (01/08/2021);
Read more ......

Please Cite

  • Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols (DOI: 10.1038/s41596-019-0264-1)
  • Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data"
    Nucleic Acids Research 45 W180-188 (DOI: 10.1093/nar/gkx295)

Acknowledgements

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