PDF Tutorials

• Performing raw data processing
• Performing statistical meta-analysis
• Performing microbiome metabolomics analysis
• (Version 2.0)Performing 16S rRNA maker-gene data profiling (MDP)
• Overview of MicrobiomeAnalyst 2.0
• Nature Protocols on MicrobiomeAnalyst
• (Updated) Performing 16S rRNA maker-gene data profiling (MDP)
• Overview of MicrobiomeAnalyst (presented in Brisbane, Australia)
• Performing 16S rRNA maker-gene data profiling (MDP)
• Performing shotgun metagenomics data analysis (SDP)
• Performing taxon set enrichment analysis (TSEA)
• Performing projection to public data space (PPD)

Example Datasets

• Example IBD datasets for MDP and TSEA
• Example arable soil datasets for PPD
• Example aging mouse datasets for SDP

Taxon Sets from the TSEA Module

• Taxon sets associated with human genetic variations (SNPs)
• Taxon sets associated with host-intrinsic factors
• Taxon sets associated with host-extrinsic factors
• Taxon sets associated with environmental-factors
• Taxon sets associated with microbiome-intrinsic factors

Source Code

• MicrobiomeAnalystR: https://github.com/xia-lab/MicrobiomeAnalystR
• Web Framework: DropBox link

Note we encourage users to use the public web servers for flexible and interactive data analysis tasks, and the R packages for batch processing. The source code is provided for transparency. They are not intended to run as production server which require advanced system admin expertise.