Marker Data Profiling

Analyze marker gene counts data

Shotgun Data Profiling

Analyze shotgun metagenomics data

Taxon Set Analysis

Discover enriched microbial signatures

Microbial Metabolomics

Co-analyze microbiome & metabolomics data

Statistical Meta-analysis

Integrate multiple marker gene data

Raw Data Processing

Convert 16S/18S/ITS reads to ASV table

Publications
  • Lu, Y., Zhou, G., Ewald, J., Pang, Z., Shiri, T., and Xia. J. (2023) "MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data" Nucleic Acids Research (DOI: 10.1093/nar/gkad407)
  • Chong, J., Liu, P., Zhou, G., and Xia. J. (2020) "Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data" Nature Protocols 15, 799–821 (DOI: 10.1038/s41596-019-0264-1)
  • Dhariwal, A., Chong, J., Habib, S., King, I., Agellon, LB., and Xia. J. (2017) "MicrobiomeAnalyst - a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data" Nucleic Acids Research 45, W180-188 (DOI: 10.1093/nar/gkx295)