name,member,reference,tsea_category,classification,host_gene,snp_id,mesh,omim,seq_inst,abund_change
Acne (Increase),Propionibacterium acnes SK137; Propionibacterium acnes SK187; Propionibacterium acnes SK182B-JCVI; Propionibacterium acnes SK182; Propionibacterium acnes J139; Propionibacterium acnes J165; Propionibacterium acnes HL096PA3; Propionibacterium acnes HL096PA2; Propionibacterium acnes HL103PA1; Propionibacterium acnes HL099PA1; Propionibacterium acnes HL097PA1; Propionibacterium acnes JCVI192,PubMed,1.6 - Disease Signature,Strain,NA,NA,C17.800.030.150; C17.800.794.11,604324,Whole Genome Sequencing,Increase
Acquired immunodeficiency syndrome (decrease),Bacteroides; Barnesiella; Clostridium Xivb; Coprococcus; Dialister,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Acquired immunodeficiency syndrome (Increase),Butyricicoccus; Catenibacterium; Dorea; Enterobacter; Enterococcus; Erysipelotrichaceae incertae sedis; Faecalibacterium; Megamonas; Phascolarctobacterium; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Acute viral gastroenteritis with complication (increase),Campylobacteraceae; Enterobacteriaceae; Methylobacteriaceae; Neisseriaceae; Sphingomonadaceae; Carnobacteriaceae; Streptococcaceae,PubMed,1.6 - Disease Signature,family,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Acute-On-Chronic Liver Failure (Increase),Clostridiales; Enterobacteriaceae; Lachnospiraceae; Pasteurellaceae; Streptococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Age (Increase),Methanobrevibacter smithii; Methanobrevibacter unclassified; Bifidobacterium adolescentis; Bifidobacterium bifidum; Bifidobacterium dentium; Bifidobacterium longum; Gordonibacter pamelaeae; Olsenella unclassified; Bacteroidesccae; Bacteroides dorei; Bacteroides eggerthii; Bacteroides intestinalis; Bacteroides ovatus; Bacteroides vulgatus; Parabacteroides goldsteinii; Alistipes finegoldii; Alistipes unclassified; Leuconostoc mesenteroides; Streptococcus mutans; Clostridium L2 50; Eubacterium eligens; Eubacterium rectale; Eubacterium siraeum; Blautia obeum; Butyrivibrio crossotus; Coprococcus catus; Coprococcus comes; Roseburia hominis; Peptostreptococcaceae noname unclassified; Anaerotruncus unclassified; Ruminococcus lactaris; Subdoligranulum unclassified; Eubacterium cylindroides; Turicibacter sanguinis; Turicibacter unclassified; Phascolarctobacterium cinatutens; Veillonella parvula; Dialister invisus; Sutterella wadsworthensis; Bilophila unclassified; Desulfovibrio piger; Akkermansia muciniphila; Bacteroides cellulosilyticus; Bacteroidales bacterium ph8; Barnesiella intestinihominis; Odoribacter splanchnicus; Alistipes senegalensis,PubMed,1.1 - Anthropometric,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Alcohol-induced hepatic injury (Increase),Akkermansia; Lachnospiraceae; Parabacteroides; Prevotellaceae; Verrucomicrobiaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Alzheimer Disease (decrease),Adlercreutzia; Anaerotruncus; Ruminococcus; Prevotella; Bacillus; Bacteroidaceae; Bacteroidetes; Clostridium; Firmicutes; Lactobacillales; Lactobacillus; Bacteroidales; Christensenellaceae; Christensenellaceae R-7 Group; Clostridiales vadinbb60 Group; Coprococcus 1; Deferribacteraceae; Deferribacterales; Deferribacteres; Deltaproteobacteria; Desulfovibrio; Desulfovibrio sp. unsw3Caefats; Desulfovibrionales; Family X? Ad3011 Group; Lachnospiraceae; Lachnospiraceae Nk4A136; Mollicutes RF9; Mucispirillum; Oscillibacter; Ruminiclostridium 9; Ruminococcaceae; Ruminococcaceae Ucg-014; Serratia; Bacteroides; Aerococcus; Facklamia; Actinobacteria; Campylobacterales; Epsilonproteobacteria; Helicobacteraceae; Lactobacillus helveticus; Acetobacter; Allobaculum; Lactobacillaceae; Butyricicoccus; Butyricicoccus pullicaecorum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Alzheimer Disease (increase),Erysipelotrichaceae; Proteobacteria; Sutterella; Campylobacterales; Deferribacteraceae; Epsilonproteobacteria; Helicobacter; Helicobacteraceae,PubMed,1.6 - Disease Signature,family,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Alzheimer Disease (Increase),Bilophila; Streptococcus; Veillonella; Desulfovibrionaceae; Helicobacter; Helicobacteraceae; Bacteroidetes; Clostridiales; Alphaproteobacteria; Betaproteobacteria; Gammaproteobacteria; Wolbachia; Subdoligranulum; Alistipes; Lachnoclostridium; Lachnospiraceae; Odoribacter; Prevotella; Ruminiclostridium; Glutamicibacter; Proteobacteria; TMAO-producing microbiota; Erysipelotrichaceae; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Alzheimer's (decrease),Bifidobacterium; SMB53; Dialister; Clostridium; Turicibacter; Adlercreutzia; cc115,PubMed,1.6 - Disease Signature,Genus,NA,NA,C10.228.140.380.100; C10.574.945.249; F03.615.400.100,104300; 607822; 104310; 606889; 608907; 615590,"16S rRNA - V4 region, Illumina MiSeq",Decrease
Alzheimer's (increase),Blautia; Bacteroides; Alistipes; Phascolarctobacterium; Bilophila; Gemella,PubMed,1.6 - Disease Signature,Genus,NA,NA,C10.228.140.380.100; C10.574.945.249; F03.615.400.100,104300; 607822; 104310; 606889; 608907; 615590,"16S rRNA - V4 region, Illumina MiSeq",Increase
"Amyotrophic Lateral Sclerosis (ALS, decrease)",Oscillobacter; Anaerostipes; Lachnospira; Lachnospiraceae,PubMed,1.6 - Disease Signature,Genus,NA,NA,C10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050,105400,"16S rRNA - V3-V4 regions, Roche 454 platform",Decrease
"Angina, Unstable (increase)",Granulicatella; Haemophilus; Klebsiella; Streptococcus,PubMed,1.6 - Disease Signature,genus,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Anorexic (decrease),Lachnospiraceae; Ruminococcaceae; Anaerostipes; Faecalibacterium; Blautia; Lachnospira; Ruminococcus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C23.888.821.108,606788,"16S rRNA - V1-V3 regions, Roche 454 FLX",Decrease
Anorexic (increase),Coriobacteriales; Porphyromonadaceae; Parabacteroides; Streptococcaceae; Actinomycetaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C23.888.821.108,606788,"16S rRNA - V1-V3 regions, Roche 454 FLX",Increase
Anxiety; Depressive Disorder (decrease),Actinobacteria; Akkermansia sp.; Dorea sp.; Paraprevotella sp.; Ruminococcus sp.; unclassified Mollicutes; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Anxiety; Depressive Disorder (increase),Deferribacteres; Flexispira sp.; Lachnospiraceae; Oscillospira sp.; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Arthritis, Juvenile (decrease)",Bacteroides eggerthii; Bacteroides fragilis; Phocaeicola plebeius; Prevotella copri; stercorea,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Arthritis, Rheumatoid (decrease)",Acidaminococcus; Anaerotruncus; Burkholderiaceae; Dialister; Enterococcus; Enterorhabdus; Megasphaera; Neisseria; Parasutterella; Parvimonas; Xanthomonas,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Arthritis, Rheumatoid (increase)",Aggregatibacter; Anaeroglobus; Campylobacter; Cardiobacteriaceae bacterium; Cardiobacterium; Eikenella; Enterobacter; Haemophilus; Helicobacter; Johnsonella; Lautropia; Pasteurella; Phascolarctobacterium; Succinatimonas; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,increase
Asthma (Increase),Helicobacter pylori; Bacteroidetes; Haemophilus; Prevotella; Proteobacteria; Staphylococcus; Comamonadaceae; Oxalobacteraceae; Sphingomonadaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C08.127.108; C08.381.495.108; C08.674.095; C20.543.480.680.095,NA,16S rRNA - Real-Time PCR,Increase
Asthma (increase),Clostridium neonatale; Lachnospiraceae; Rothia; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Asthma(One-month-old child at risk) (decrease),Enterococcus; Haemophilus; Parabacteroides; Staphylococcus; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Asthma(One-month-old child at risk) (increase),Actinomyces; Bacteroides; Bifidobacterium; Lactobacillus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Asthma(One-year-old child at risk) (decrease),Actinomyces; Bifidobacterium; Enterococcus; Haemophilus; Lactobacillus; Staphylococcus; Streptococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Asthma(One-year-old child at risk) (increase),Akkermansia; Alistipes; Bacteroides; Blautia; Faecalibacterium; Parabacteroides; Prevotella; Roseburia; Haemophilus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Atherosclerosis (decrease),Rikenellaceae; S24-7; Lactobacillus; Anaeroplasma; Dehalobacterium; Eubacterium; Oscillospira; Roseburia; Bifidobacterium; Clostridium; Comamonadaceae; Turicibacterium; Bilophila; Desulfovibrionaceae; Helicobacter; Proteobacteria; Verrucomicrobia; Bacteroides; Dialister; Faecalibacterium; Tenericutes; Ruminococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Atherosclerosis (Increase),Allobaculum; Clostridiales; Mucispirillum; Coprococcus; Dehalobacterium; Oscillospira; Bifidobacterium; Clostridium; Lactobacillus; Dehalobacteriaceae; Bilophila; Christenellaceae; Deferribacteres; Peptostreptococcaceae; Streptococcaceae; Verrucomicrobia; Prevotella; Lachnospiraceae; Ruminococcaceae; Aeromonadaceae; Citrobacter; Firmicutes; Proteobacteria; Tenericutes; Clostridium IV; Klebsiella; Roseburia; 5-(3'; Emergencia�timonensis; Akkermansia; Bacteroides,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Atherosclerosis (increase),Desulfovibrionaceae; Firmicutes; Helicobacteraceae; Lachnospiraceae; Oscillospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Atopic dermatitis (Japan) (Increase),Clostridium difficile; Dietzia maris; Stenotrophomonas maltophilia; Staphylococcus aureus; Staphylococcus epidermidis,PubMed,1.6 - Disease Signature,Species,NA,NA,C16.320.850.210; C17.800.174.193; C17.800.815.193; C17.800.827.210; C20.543.480.343,NA,16S rRNA - Real-Time PCR,Increase
Attention Deficit Disorder with Hyperactivity (increase),Actinobacteria; Bifidobacterium; Neisseria; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Autism (decrease_g),Selenomonas; Prevotella; Fusobacterium; TM7_[G-1]; Treponema; Tannerella; Veillonellaceae_[G-1]; Alloprevotella; Olsenella; Dialister; Oribacterium; Peptococcus; Parvimonas; Peptostreptococcus; Atopobium; Peptostreptococcaceae_[XI][G-9],PubMed,1.6 - Disease Signature,Genus,NA,NA,F03.625.164.113.500,209850; 609378; 608636; 606053; 611015; 611913,"16S rRNA - V3-V4 regions, Illumina MiSeq",Decrease
Autism (decrease),Collinsella; Bifidobacterium longum; Bifidobacterium angulatum; Dialister invisus; Clostridium leptum,PubMed,1.6 - Disease Signature,Mixed,NA,NA,F03.625.164.113.500,209850; 609378; 608636; 606053; 611015; 611913,"16S rRNA - Variable regions, Roche 454 FLX",Decrease
Autism (g_decrease),Fusobacterium; Rothia; Porphyromonas; Actinomyces; TM7_[G-1]; Lachnoanaerobaculum; Oribacterium; Catonella; Ruminococcaceae_[G-1]; TM7_G-6; Stomatobaculum; Lachnospiraceae_[G-2]; Peptostreptococcus; TM7_[G-3]; SR1_[G-1]; Peptrostreptococcaceae_[XI][G-1]; Solobacterium; Parvimonas; Ruminococcaceae_[G-2]; Peptococcus; Mogibacterium; Butyrivibrio,PubMed,1.6 - Disease Signature,Genus,NA,NA,F03.625.164.113.500,209850; 609378; 608636; 606053; 611015; 611913,"16S rRNA - V3-V4 regions, Illumina MiSeq",Decrease
Autism (g_increase),Haemophilus; Corynebacterium; Neisseriaceae_unclassified; Cardiobacterium; Kingella,PubMed,1.6 - Disease Signature,Genus,NA,NA,F03.625.164.113.500,209850; 609378; 608636; 606053; 611015; 611913,"16S rRNA - V3-V4 regions, Illumina MiSeq",Increase
Autism (increase),Desulfovibrio; Desulfovibrio piger; Desulfovibrio desulfuricans; Desulfovibrio intestinalis; Bacteroides vulgatus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,F03.625.164.113.500,209850; 609378; 608636; 606053; 611015; 611913,"16S rRNA - Variable regions, Roche 454 FLX",Increase
Autism Spectrum Disorder (decrease),Faecalibacterium; Haemophilus; Abiotrophia; Bacteroides ovatus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Autism Spectrum Disorder (increase),Bifidobacterium; Lactobacillus; Megasphaera; Mitsuokella; Anaeroplasma; Clostridium; Epulopiscium; Hydrogenophilus; Mesorhizobium; Promicromonosporaceae; Salinicoccus; Solirubrobacterales; Sphingobium xenophagum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Bacteremia (Increase),Arcobacter butzleri JV22; Enterococcus faecalis HH22; Enterococcus faecalis TX0104; Enterococcus faecium DO; Enterococcus faecalis S613; Enterococcus faecalis R712; Campylobacter upsaliensis JV21,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.252.100; C01.539.757.100; C23.550.470.790.500.100,NA,Whole Genome Sequencing,Increase
Bacterial vaginosis (increase_st),Lachnospiraceae BVAB1; Clostridiales BVAB3; Sneathia sanguinegens; Mycoplasma hominis,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.252.954; C13.351.500.894.906.800,NA,Whole Genome Sequencing,Increase
Bacterial Vaginosis (increase),Clostridiales; Lactobacillus crispatus; Leptotrichia; Betaproteobacteria; Clostridium; Fusobacteria; Lactobacillus; Megasphaera; Olsenella; Porphyromonas uenonis; Shuttleworthia; Streptobacillus; Actinobacteria; Aerococcus; Atopobium; Atopobium vaginae; Eggerthella; Firmicutes; Gardnerella; Gardnerella vaginalis; Lactobacillus iners; Mobiluncus; Papillibacter; Prevotella; Leptotrichia amnionii,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C01.252.954; C13.351.500.894.906.800,NA,16S rRNA - Fluorescence in situ hybridization,Increase
Bacterial vaginosis (sp_increase),Lactobacillus crispatus; Lactobacillus jensenii; Lactobacillus iners; Mageeibacillus indolicus; Atopobium vaginae; Gardnerella vaginalis; Mobiluncus curtisii; Mobiluncus mulieris; Bacteroides fragilis; Mycoplasma hominis; Ureaplasma urealyticum; Sneathia sanguinegens; Mycoplasma genitalium,PubMed,1.6 - Disease Signature,Species,NA,NA,C01.252.954; C13.351.500.894.906.800,NA,16S rRNA - qPCR,Increase
Bacterial vaginosis (st_increase),"Gardnerella vaginalis 317, ATCC 14019; Gardnerella vaginalis 409-05; Mobiluncus mulieris 28-1; Mobiluncus mulieris ATCC 35239; Gardnerella vaginalis JCM 11026; Gardnerella vaginalis 403-17; Gardnerella vaginalis 315-A",PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.252.954; C13.351.500.894.906.800,NA,Whole Genome Sequencing,Increase
Beta Defensin 2 (Increase),Eggerthella unclassified; Bacteroidales bacterium ph8; Barnesiella intestinihominis; Parabacteroides merdae; Streptococcus australis; Streptococcus thermophilus; Eubacterium siraeum; Subdoligranulum unclassified; Phascolarctobacterium cinatutens; Veillonella unclassified; Bilophila unclassified; Akkermansia muciniphila,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Bile Acid Metabolism (decrease),Anaeroplasma; Bifidobacterium; Dorea; Peptococcaceae; Ruminococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Blastocystis?Infections (decrease),Bacilli; Enterobacteriaceae; Enterococcaceae; Lactobacillaceae; Streptococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Blastocystis?Infections (increase),Acetanaerobacterium; Acetivibrio; Clostridia; Coprococcus; Hespellia; Mollicutes; Oscillibacter; Papillibacter; Prevotella; Prevotellaceae; Oscillospiraceae; Ruminococcus; Sporobacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
BMI (Increase),Bacteroides cellulosilyticus; Bacteroidales bacterium ph8; Barnesiella intestinihominis; Odoribacter splanchnicus; Alistipes finegoldii; Alistipes senegalensis; Anaerotruncus unclassified,PubMed,1.1 - Anthropometric,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
"Brain Injuries, Traumatic (increase)",Eubacteriales; Eubacterium sulci; Marvinbryantia; Marvinbryantia formatexigens,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Breast Neoplasms (decrease),Clostridiales; Ruminococcus; Actinobacteria; Turicibacter; Alistipes indistinctus; Firmicutes; Oscillibacter; Parasutterella; Escherichia coli; Klebsiella; Lactobacillus vaginalis; Ralstonia; Sphingomonas yanoikuyae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Breast Neoplasms (Increase),Bacteroides; Bacillus; Bacteroidetes; Comamonadaceae; Enterobacteriaceae; Staphylococcaceae; Atopobium; Fusobacterium; Gluconacetobacter; Hydrogenophaga; Lactobacillus; Blautia; Clostridium; Clostridium leptum; Faecalibacterium prausnitzii; Corynebacterium; Escherichia coli; Listeria fleischmannii; Proteobacteria; Akkermansia; Anaerostipes; Coprobacillus; Eubacterium; Lactococcus; Paraprevotella; Ruminococcaceae; Actinomyces; Enterococcus gallinarum; Erwinia amylovora; Eubacterium eligens; Porphyromonas uenonis; Prevotella amnii; Shewanella putrefaciens; Methylobacterium; Methylobacterium radiotolerans,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Bristol av. stool type adjusted (Increase),Faecalibacterium prausnitzii; Veillonella unclassified; Lachnospiraceae bacterium 3 1 57FAA CT1; Haemophilus parainfluenzae; Ruminococcus 5 1 39BFAA; Veillonella parvula,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Bristol av.stool.freq (Increase),Lachnospiraceae bacterium 3 1 57FAA CT1; Clostridium bartlettii; Peptostreptococcaceae noname unclassified; Faecalibacterium prausnitzii; Subdoligranulum unclassified; Turicibacter unclassified; Veillonella unclassified; Bilophila unclassified; Escherichiali; Bacteroides caccae; Bacteroides vulgatus; Bacteroidales bacterium ph8; Alistipes finegoldii; Alistipes onderdonkii; Alistipes shahii; Eubacterium rectale; Roseburia inulinivorans; Ruminococcus 5 1 39BFAA; Veillonella parvula; Haemophilus parainfluenzae,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Calprotectin (Increase),Rothia mucilaginosa; Bifidobacterium dentium; Lactobacillus sakei; Streptococcus anginosus; Streptococcus australis; Streptococcus mutans; Streptococcus parasanguinis; Streptococcus salivarius; Streptococcus sanguinis; Streptococcus vestibularis; Veillonella parvula; Veillonella unclassified; Escherichiali; Escherichia unclassified; Haemophilus parainfluenzae,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Cardiorespiratory Fitness(low) (increase),Enterobacteriaceae; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Cardiovascular Diseases (decrease),Bacteroides fragilis; Betaproteobacteria; Bifidobacterium; Burkholderiales; Aggregatibacter; Anaerovibrio; Bacteroidetes; Dorea; Lachnospiraceae; Phascolarctobacterium; Prevotella; Prevotellaceae; RC4-4; Sutterella; YS-2; TMAO-producing microbiota; Oscillospira; Turicibacter; Urolithins producting microbiota; Odoribacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Cardiovascular Diseases (Increase),Actinobacteria; Bacillales; Coriobacteriaceae; TMAO-producing microbiota; Adlercreutzia; Bacteroidales; Bifidobacterium; CF231; Clostridiaceae; Coprococcus; Desulfovibrio; Desulfovibrionaceae; Firmicutes; Peptostreptococcaceae; Roseburia; SMB53; Treponema,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Celiac Disease (decrease),Bifidobacterium longum; Enterococcaceae; Firmicutes; Peptostreptococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Chemical And Drug Induced Liver Injury (decrease),Clostridiales; Erysipelotrichales; Firmicutes; Lactobacillales; Lactobacillus; Ruminococcaceae; Bacteroides; Bacteroidetes; Clostridium IV; Clostridium XlVa; Helicobacter; Paraprevotella; Prevotella; Proteobacteria; Bifidobacterium; Anaeroplasma; Anaerostipes; Rikenellaceae; Dehalobacteriaceae; Microbiota form alcohol-fed mice; Mucispirillum schaedleri; Ruminococcus; Enterorhabdus; Flavonifractor; Oscillospira,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Chemical And Drug Induced Liver Injury (Increase),Bacteroidaceae; Bacteroidetes; Blautia; Barnesiella; Clostridium IV; Clostridium XlVa; Firmicutes; Prevotella; Proteobacteria; Bacteroides; Enterobacteriaceae; Escherichia coli; Lactobacillus; Actinobacteria; Alistipes; Enterorhabdus; Pseudoflavonifractor; Rikenella; Bacteroides acidifaciens; Coriobacteriaceae; Cyanobacteria; Dehalobacterium; Microbiota form alcohol-fed mice; Mucispirillum; Odoribacter; Parabacteroides distasonis; Acidobacteria; Enterococcus; Oscillibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Cholangitis and Inflammatory Bowel Diseases (decrease),Actinobacteria; Blautia; Fusobacteria; Lachnospira; Ruminococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Cholangitis, Sclerosing (decrease)",uncultured Clostridium sp.; Citrobacter; Dorea; Oscillospira; Eubacterium; Fusobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Cholangitis, Sclerosing (increase)",Barnesiellaceae; Blautia; Akkermansia; Clostridium; Veillonella; Enterococcus; Fusobacterium; Lactobacillus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Cholangitis, Sclerosing; Colitis, Ulcerative (increase)",Enterococcus; Fusobacterium; Haemophilus; Lactobacillus; Ruminococcus; Scardovia; Streptococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Cholangitis, Sclerosing; Colitis, Ulcerative(Canadian) (increase)",Collinsella; Lachnospira; Oscillospira; Roseburia; Ruminococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Cholangitis, Sclerosing; Colitis, Ulcerative(Norse) (increase)",Acinetobacter; Corynebacterium; Lactobacillus; Ralstonia; Rothia; Sphingomonas; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Cholangitis, Sclerosing; Crohn's disease (increase)",Barnesiella; Bifidobacterium; Coprococcus; Enterococcus; Faecalibacterium; Fusobacterium; Lactobacillus; Morganella; Ruminococcus; Sporobacter; Streptococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Cholecystitis, Acute (increase)",Akkermansia; Enterobacter; Enterobacteriaceae; Escherichia coli; Escherichia/Shigella sp.,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
chromogranin A (decrease),Adlercreutzia; Allobaculum; Bacteroidaceae; Clostridia; Oscillospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
chromogranin A (increase),Alphaproteobacteria; Bacteroides; Bacteroidetes; Bifidobacterium; Chitinophagaceae; Eubacteriales; Coriobacteriaceae; Dorea; Ovatus; Parabacteroidesdistarosis; Prevotella; Pseudomonadaceae; RF32; Rikenellaceae; Stenotrophomonas; YS2,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
ChromograninA (Increase),Methanobrevibacter smithii; Methanobrevibacter unclassified; Bifidobacterium longum; Adlercreutzia equolifaciens; Eggerthella lenta; Eggerthella unclassified; Gordonibacter pamelaeae; Olsenella unclassified; Bacteroides caccae; Bacteroides cellulosilyticus; Bacteroides dorei; Bacteroides eggerthii; Bacteroidesecis; Bacteroides intestinalis; Bacteroides massiliensis; Bacteroides plebeius; Bacteroides salyersiae; Bacteroides stercoris; Bacteroides thetaiotaomicron; Bacteroides uniformis; Bacteroides vulgatus; Bacteroidales bacterium ph8; Barnesiella intestinihominis; Odoribacter splanchnicus; Parabacteroides distasonis; Parabacteroides goldsteinii; Parabacteroides johnsonii; Parabacteroides merdae; Parabacteroides unclassified; Paraprevotella clara; Paraprevotella unclassified; Prevotella copri; Alistipes finegoldii; Alistipes indistinctus; Alistipes onderdonkii; Alistipes putredinis; Alistipes senegalensis; Alistipes shahii; Lactobacillus delbrueckii; Lactobacillus sakei; Streptococcus australis; Streptococcus parasanguinis; Streptococcus salivarius; Streptococcus sanguinis; Streptococcus thermophilus; Clostridium L2 50; Eubacterium eligens; Eubacterium rectale; Eubacterium siraeum; Blautia hydrogenotrophica; Ruminococcus gnavus; Ruminococcus torques; Butyrivibrio crossotus; Coprococcus catus; Coprococcus eutactus; Coprococcus ART55 1; Lachnospiraceae bacterium 1 1 57FAA; Lachnospiraceae bacterium 1 4 56FAA; Lachnospiraceae bacterium 2 1 58FAA; Lachnospiraceae bacterium 7 1 58FAA; Roseburia hominis; Anaerotruncus unclassified; Ruminococcus bromii; Ruminococcus 5 1 39BFAA; Subdoligranulum unclassified; Catenibacterium mitsuokai; Coprobacillus unclassified; Eubacterium biforme; Phascolarctobacterium succinatutens; Dialister invisus; Mitsuokella unclassified; Veillonella unclassified; Sutterella wadsworthensis; Bilophila unclassified; Desulfovibrio piger; Akkermansia muciniphila,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Chronic nonbacterial prostate inflammation (increase),Allobaculum stercoricanis; Clostridiaceae; Odoribacter; Peptococcaceae; Rikenellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Chronic Obstructive Pulmonary Disease (COPD) (Increase),Bacteroidetes; Haemophilus; Prevotella; Proteobacteria; Pseudomonas; Burkholderia; Lactobacillus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C08.381.495.389,NA,16S rRNA - Real-Time PCR,Increase
"Cirrhosis (China, decrease)",Faecalibacterium prausnitzii; Bacteroides. D20; Alistipes putredinis; Bacteroides. 4 1 36; Bacteroides uniformis; Eubacterium eligens; Eubacterium rectale; Parabacteroides merdae; Bacteroides finegoldii; Odoribacter splanchnicus; Roseburia intestinalis; Bacteroides eggerthii; Ruminococcus. 5 1 39BFAA; Bacteroides. 1 1 30; Roseburia hominis; Bacteroides. 9 1 42FAA; Bilophila wadsworthia; Eubacterium hallii; Alistipes finegoldii; Parabacteroides distasonis; Bacteroides; Eubacterium; Alistipes; Faecalibacterium; Roseburia; Parabacteroides; Odoribacter; Ruminococcus; Dorea; Bilophila; Coprococcus; Tannerella; Subdoligranulum; Holdemania; Phascolarctobacterium,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.552.630,215600,16S rRNA - Illumina MiSeq,Decrease
"Cirrhosis (China, increase)",Streptococcus salivarius; Veillonella parvula; Veillonella atypica; Ruminococcus gnavus; Haemophilus parainfluenzae; Veillonella. 6 1 27; Veillonella. 3 1 44; Lachnospiraceae bacterium 2 1 58FAA; Veillonella dispar; Streptococcus parasanguinis; Veillonella. HOT 158; Lactobacilluslvarius; Streptococcus vestibularis; Streptococcus anginosus; Veillonella; Streptococcus; Prevotella; Haemophilus; Lactobacillus; Fusobacterium; Megasphaera,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.552.630,215600,16S rRNA - Illumina MiSeq,Increase
Clostridium difficile infection (decrease),Alistipes; Butyricimonas; Eubacteriales; Oscillospira; Oscillospiraceae; Bacteroides; Dialister; Dorea; Faecalibacterium; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Clostridium difficile infection (increase),Enterobacteriaceae; Gammaproteobacteria; Klebsiella; Anaerosporobacter; Eubacteriales; Enterobacter; Enterococcus; Erysipelotrichaceae; Lachnospiraceae; Oscillospiraceae; Peptostreptococcaceae; Succiniclasticum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Clostridium Infections (decrease),Enterococcus; Erysipelotrichaceae; Lachnospiraceae; Bacteroidetes; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Clostridium Infections (Increase),Akkermansia; Bacteroides; Bacteroides fragilis; Bifidobacteria; Clostridium; Clostridium difficile,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Coffee consume (decrease),Bacteroides; Enterobacter; Lactobacillus; Shigella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Colitis (decrease),Lachnospiraceae; Porphyromonas; Prevotellaceae; Ruminococcaceae; Clostridia cluster IV; Clostridia cluster Xiva; Bacteroidetes; Firmicutes; Lactobacillus; Akkermansia; Allobaculum; Bifidobacterium; Gammaproteobacteria; Oscillospira; Bacteroides; Clostridium; Roseburia; Lactobacillales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Colitis (Increase),Bacteroidaceae; Helicobacteraceae; Enterobacteriaceae; Lactobacillus salivarius; Escherichia coli; Akkermansia muciniphila; Alistipes; Odoribacter; Proteobacteria; Coprococcus; Prevotellaceae; Flavonifractor; Desulfovibrio; Prevotella; Bacteroidetes; Lactobacillales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Colitis, Ulcerative (decrease)",Clostridia; Clostridium; Coriobacteriia; Firmicutes; Lentisphaerae; Verrucomicrobiae; Bifidobacterium; Lactobacillus; Faecalibacterium prausnitzii; Alistipes; Anaerotruncus; Collinsella; Coprobacter; Flavonifractor; Megasphaera; Odoribacter; Oscillospira; Paraprevotella; Parasutterella; Subdoligranulum; Thalassospira; Bilophila wadsworthia; Eubacteriales; Eubacterium rectale; 02d06; Bacteroidetes; Butyricimonas; Desulfovibrio; Holdemania; Lachnobacterium; Megamonas; Mitsuokella; Oxalobacter; Prevotella; Pyramidobacter; Synergistes; Victivallis,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
"Colitis, Ulcerative (increase)",Actinobacteria; Actinomycetia; Alphaproteobacteria; Bacilli; Betaproteobacteria; Deltaproteobacteria; Enterobacteriaceae; Epsilonproteobacteria; Erysipelotrichia; Fusobacteria; Gammaproteobacteria; Proteobacteria; Spirochaetes; Bacteroides; Escherichia coli; Lactobacillus; Anaerococcus; Erysipelatoclostridium ramosum; Fusobacterium nucleatum; Ruminococcus gnavus; Actinomyces; Campylobacter; Capnocytophaga; Corynebacterium; Eggerthella; Escherichia; Granulicatella; Janthinobacterium; Peptostreptococcus; Schwartzia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Colitis,Ulcerative (decrease)",Bacteroidetes; Atopobium; Bacteroidaceae; Bacteroides fragilis; Bacteroides ovatus; Bacteroides thetaiotaomicron; Bifidobacterium; Blautia coccoides; Clostridium leptum; Phocaeicola vulgatus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Colitis,Ulcerative (increase)",Bacteroides; Enterobacteriaceae; Faecalibacterium prausnitzii; Enterococcus; Lactobacillus; Ruminococcus gnavus; Bifidobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Colorectal Adenomatous Polyposis, Autosomal Recessive (increase)",Actinobacteria; Bacteroidetes; Candidatus Saccharibacteria; Chloroflexi; Cyanobacteria; Firmicutes; Lactococcus; Proteobacteria; Pseudomonas; Tenericutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Colorectal cancer (CRC) Austria (Increase),Acidaminococcus intestini; Actinomyces viscosus; Alistipes finegoldii; Alistipes onderdonkii; Alistipes putredinis; Bacteroides caccae; Bacteroides dorei; Bacteroides eggerthii; Bacteroides massiliensis; Bacteroides ovatus; Bacteroides. 1_1_30; Bacteroides. 4_1_36; Bacteroides vulgatus; Bacteroides xylanisolvens; Bifidobacterium animalis; Bilophila wadsworthia; Burkholderiales bacterium 1_1_47; butyrate-producing bacterium SS3/4; Clostridium asparagiforme; Clostridium bolteae; Clostridium hathewayi; Clostridium. SS2/1; Clostridium symbiosum; Dialister invisus; Escherichiali; Fusobacterium.al taxon 370; Gemella morbillorum; Lachnospiraceae bacterium 3_1_46FAA; Lachnospiraceae bacterium 3_1_57FAA_CT1; Lachnospiraceae bacterium 7_1_58FAA; Odoribacter splanchnicus; Parabacteroides distasonis; Parabacteroides merdae; Paraprevotella; Parvimonas micra; Peptostreptococcus stomatis; Porphyromonas somerae; Prevotella copri; Ruminococcaceae bacterium D16; Ruminococcus. 5_1_39BFAA; Streptococcus mutans; Streptococcus thermophilus; Sutterella wadsworthensis,PubMed,1.6 - Disease Signature,Strain,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,Increase
Colorectal cancer (CRC) France (Increase),Fusobacterium nucleatum subsp. Vincentii; Fusobacterium nucleatum subsp. animalis; Peptostreptococcus stomatis; Porphyromonas asaccharolytica; Clostridium symbiosum; Clostridium hylemonae; Bacteroides fragilis; Lactobacillus salivarius; Fusobacterium gonidiaformans; Lactobacillus ruminis; Eubacterium rectale; Bacteroides caccae; Eubacterium ventriosum; Clostridiumindens; Eubacterium eligens; Bifidobacterium angulatum; Methanosphaera stadtmanae; Dorea formicigenerans; Butyrivibrio crossotus; Phascolarctobacterium cinatutens; Ruminococcus; Streptococcus salivarius,PubMed,1.6 - Disease Signature,Strain,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,Increase
Colorectal cancer (CRC) Hong Kong and Denmark (Increase),Peptostreptococcus stomatis; Parvimonas micra; Parvimonas.al taxon 393; Parvimonas.al taxon 110; Gemella morbillorum; Fusobacterium nucleatum; Leptotrichia buccalis; Fusobacterium.al taxon 370; Burkholderia mallei; Prevotella intermedia; Streptococcus pseudoporcinus; Streptococcus dysgalactiae; Beggiatoa. PS; Malassezia bosa; Paracoccus denitrificans; Eubacterium ventriosum; Streptococcus stellatus; Filifactor alocis; Peptoniphilus indolicus; Crenothrix polyspora; Peptostreptococcus anaerobius; Streptococcus equi; Solobacterium moorei; Sulfurovum. SCGC AAA036-O23; Streptobacillus moniliformis,PubMed,1.6 - Disease Signature,Strain,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,Increase
Colorectal cancer (early stages) (Increase),Atopobium parvulum; Actinomyces odontolyticus; Desulfovibrio longreachensis; Phascolarctobacterium succinatutens,PubMed,1.6 - Disease Signature,Species,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,Increase
Colorectal cancer (early to late stages) (Increase),Fusobacterium nucleatum; Solobacterium moorei; Peptostreptococcus stomatis; Peptostreptococcus anaerobius; Lactobacillus sanfranciscensis; Parvimonas micra; Gemella morbillorum,PubMed,1.6 - Disease Signature,Species,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,Increase
Colorectal cancer (global signature),Fusobacterium; Porphyromonas; Parvimonas; Peptostreptococcus; Gemella; Prevotella; Solobacterium; Dialister; Clostridiales,PubMed,1.6 - Disease Signature,Species,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,Shotgun Sequencing,NA
"Colorectal carcinogenesis (Carcinoma, decrease)",Escherichiali; Bacteroides; Faecalibacterium prausnitzii; Blautia; Pseudomonas veronii; Bacillales,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,"16S rRNA - V1-V4 regions, Roche 454 platform",Decrease
"Colorectal carcinogenesis (Carcinoma, increase)",Bacteroides fragilis; Fusobacterium; Granulicatella; Parvimonas; Peptostreptococcus; Oscillospira; Prevotella intermedia; Gemella; Aggregatibactergnis; Prevotella; Campylobacter; Porphyromonas endodontalis; Bacteroides ovatus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,"16S rRNA - V1-V4 regions, Roche 454 platform",Increase
Colorectal carcinogenesis (decrease),Ehrlichia ruminantium; Bartonella bacilliformis; Eubacterium eligens; Acinetobacter. ADP1; Mycoplasmanadense; Weissellabaria; Dictyoglomus thermophilum; Thermosipho africanus; Thermodesulfobacterium geofontis; Campylobacter iguaniorum; Spiroplasma diminutum; Candidatus; Phtoplasma australiense; Mycoplasma capricolum; Arcobacter. L; Streptococcus. I-G2; Staphylococcus argenteus; Streptococcus thermophilus; SR1 bacterium RAAC1; Streptococcus salivarius; Bifidobacterium catenulatum,PubMed,1.6 - Disease Signature,Species,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,"16S rRNA - Whole genome sequencing, Illumina HiSeq",Decrease
Colorectal carcinogenesis (increase),Bacteroides fragilis; Fusobacterium nucleatum; Porphyromonas asaccharolytica; Parvimonas micra; Prevotella intermedia; Alistipes finegoldii; Thermanaerovibrio acidaminovorans,PubMed,1.6 - Disease Signature,Species,NA,NA,C04.588.274.476.411.307; C06.301.371.411.307; C06.405.249.411.307; C06.405.469.158.356; C06.405.469.491.307; C06.405.469.860.180,114500,"16S rRNA - Whole genome sequencing, Illumina HiSeq",Increase
"Colorectal Carcinoma (US and Vietnam, decrease)",Enterobacteroacae; Enterobacter; Acinetobacter; Acinetobacter baumannii; Faecalibacterium; Bacteroidaceae; Bacteroides; Ruminococcaceae; Bacteroidetes; Firmicutes; Clostridiales; Clostridia,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C04.588.274.476.411.307.180; C06.301.371.411.307.180; C06.405.249.411.307.180; C06.405.469.158.356.180; C06.405.469.491.307.180,114500,"16S rDNA - V3-V5 regions, Roche 454 FLX",Decrease
"Colorectal Carcinoma (US and Vietnam, increase)",Fusobacterium nucleatum; Fusobacterium; Fusobacteriaceae; Streptococcaceae; Aggregatibacter; Aggregibacter aphrophilus; Fusobacteriales; Fusobacteria,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C04.588.274.476.411.307.180; C06.301.371.411.307.180; C06.405.249.411.307.180; C06.405.469.158.356.180; C06.405.469.491.307.180,114500,"16S rDNA - V3-V5 regions, Roche 454 FLX",Increase
Colorectal conventional adenoma (decrease),Bacteroides; Christensenellaceae; Clostridiaceae; Coprobacillus; Coprococcus; Mogibacteriaceae; Oscillospiraceae; unclassified Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Colorectal conventional adenoma (increase),Actinomyces; Bacilli; Corynebacterium; Dorea; Enterobacterales; Gammaproteobacteria; Peptoniphilus; Phascolarctobacterium; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,increase
Colorectal hyperplastic polyp (decrease),Coprobacillus; Enterobacterales; Gammaproteobacteria; Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Colorectal Neoplasms (absent),Actinomycetales; Aeromonas; Allomonas; Anaerotruncus; Anaerovorax; Bacteroides; Bifidobacteriaceae; Bradyrhizobium; Brevundimonas; Coprobacillus; Coriobacteriales; Corynebacterineae; Desulfovibrio; Finegoldia; Haemophilus; Lachnospiraceae incertae sedis; Marinomonas; Oscillospiraceae incertae sedis; Pseudoalteromonas; Rheinheimera; Shigella; Uruburuella; Veillonella; Vibrio,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,absent
Colorectal Neoplasms (decrease),Clostridium group Xiva; Actinobacteria; Firmicutes; Fusobacteria; Sinergistetes; Alistipes putredinis; Bacteroides; Blautia; Collinsella aerofaciens; Faecalibacterium prausnitzii; Sutterella; Bacteroidetes; Clostridiaceae; Lachnospiraceae; Ruminococcaceae; Bifidobacterium; Lachnospira; Lactobacillus; Roseburia; Odoribacter; Christensenellaceae; Temperate bacteriophages; Shigella; Escherichia Coli; Bifidobacterium pseudocatenulatum; Fusobacterium�mortiferum; Bacteroides fragilis; Lactobacillus reuteri; Microbiota form homo sapiens; Bacteroides capillosus; Bacteroides finegoldii; Bacteroides intestinalis; Dialister invisus; Dialister pneumosintes; Dorea formicigenerans; Lachnobacterium bovis; Lachnospira pectinoschiza; Megamonas hypermegale; Prevotella copri; Prevotella oris; Pseudobutyrivibrio ruminis; Ruminococcus albus; Ruminococcus obeum; Bacteroidaceae; Parabacteroides distasonis,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Colorectal Neoplasms (decrease),Dorea; Firmicutes; Streptococcus; Clostridia; Enterococcus; Akkermansia muciniphila; Acinetobacter; Actinobacteria; Bacillus; Lactococcus; Parabacteroides; Pseudomonas; Bradyrhizobiaceae; Megamonas; Mitsuokella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Colorectal Neoplasms (Increase),Akkermansia; Alistipes; Bacteroides; Parabacteroides; Bulleida; Campylobacter; Eikenella; Fusobacterium; Gemella; Parvimonas; Streptococcus; Fusobacterium nucleatum; Leptotrichia; Firmicutes; Bacillus; Gammaproteobacteria; Actinobacteria; Candidatus; Escherichia; Prevotella; Salmonella typhimurium; Selenomonas; Shigella; Bacilli; Erysipelortrichales; Lactobacillales; Sphingobacteriia; Desulfovibrio; Lactobacillus; Mucispirillum; Bifidobacteriaceae; Odoribacteraceae; Peptostreptococcaceae; Turicibacteraceae; Bacteroidetes; Blautia; Lactobacillus pentosus; Enterococcus; Clostridiaceae; Escherichia coli; Bacteroides fragilis; Faecalibacterium prausnitzii; Stool metabolome of CRC patients; Proteobacteria; Verrucomicrobia; Lipopolysaccharide producing microbiota; Akkermansia muciniphila; Enterococcus faecalis; Butyric acid producing bacteria; Microbiota form homo sapiens; Acidaminobacter; Citrobacter farmer; Phascolarctobacterium; Clostridiales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Colorectal Neoplasms (increase),Acidobacteria; Acidovorax; Acinetobacter; Actinobacteria; Agrobacterium; Akkermansia; Allobaculum; Aquabacterium; Azonexus; Marvinbryantia; Chryseobacterium; Cloacibacterium; Cyanobacteria; Dechloromonas; Delftia; Exiguobacterium; Fusobacteria; Helicobacter; Lactobacillus; Lactococcus; Leuconostoc; Micrococcales; Novosphingobium; Pantoea; Proteobacteria; Pseudomonas; Pseudoxanthomonas; Rubrobacterales; Serratia; Sphingobium; Stenotrophomonas; Succinivibrio; Turicibacter; Verrucomicrobia; Weissella; Acidaminobacter; Akkermansia muciniphila; Citrobacter farmeri; Phascolarctobacterium; Fusobacterium; Porphyromonas; Faecalibacterium prausnitzii A2-165; Bacteroides; Oscillibacter; Parvimonas; Peptostreptococcus; Roseburia; Ruminococcus; Bilophila wadsworthia; Bifidobacterium; Clostridium; Desulfobacter sp.; Klebsiella; Staphylococcus; Streptococcaceae; Streptococcus; Enterobacteriaceae; Fusobacterium nucleatum; Alloprevotella; Bacteroidetes; Prevotella; Atopobium; Bilophila; Butyricimonas; Christensenella; Dehalobacterium; Desulfovibrionaceae; Erysipelotrichaceae; Eubacterium; Holdemania; Mycobacteriaceae; Odoribacter; Oscillospira; Oxalobacter; Parabacteroides; Rikenellaceae; Selenomonas,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Colorectal Neoplasms (present),Alistipes; Anaerococcus; Bacteroidetes; Bilophila; Burkholderia; Butyrivibrio; Citrobacter; Clostridiaceae; Comamonas; Coprococcus; Dialister; Enhydrobacter; Enterobacter; Erwinia; Faecalibacterium; Fusobacterium; Gemella; Holdemania; Megamonas; Methylobacterium; Papillibacter; Parabacteroides; Paracoccus; Pedobacter; Prevotella; Propionibacterineae; Ralstonia; Roseburia; Ruminococcus; Shinella; Sphingomonas; Staphylococcus; Subdoligranulum; Succinispira; Sutterella; Syntrophococcus; Variovorax; Escherichia; Lactobacillaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,present
Colorectal Neoplasms(stool) (increase),Coriobacteriaceae; Erysipelotrichaceae; Peptostreptococcaceae; Prevotellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Constipation (decrease),Actinobacteria; Bacteroidetes; Bacteroidaceae; Prevotellaceae; Shirota pseudobutyrivibrio; Dorea; Prevotella; Ruminococcus; Akkermansia; Methane producing microbiota; Bifidobacteriaceae; Bifidobacterium; Firmicutes; Lactobacillaceae; Lactobacillus; Shigella; Coriobacteria; Faecalibacterium; Lachnospira; Phascolarctobacterium; Sutterella; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Constipation (decrease),Prevotella; Prevotellaceae; Acidaminococcus; Allisonella; Bacteroidetes; Clostridium septicum; Enterobacteriaceae bacterium; Erysipelotrichaceae bacterium; Eubacterium ruminantium; Gelria; Klebsiella; Lachnospiraceae bacterium; Megamonas; Megasphaera; Paraprevotella; Prevotella sp.; Proteobacteria; Rikenellaceae bacterium; Terrisporobacter; Weissella; Lachnospira; Sutterella; Actinobacteria; Anaerotruncus; Bifidobacterium; Firmicutes; Lachnospiraceae; Lactobacillus; Roseburia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Constipation (Increase),Oscillospira; Treponema; Akkermansia muciniphila; Lactobacillus casei; Lachnospiraceae; Ruminococcaceae; Firmicutes; Methane producing microbiota; Microbiota in feces from constipated donors; Alistipes; Bacteroides; Odoribacter; Rikenellaceae; Christensenella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Constipation (increase),Oscillospiraceae; Lachnospiraceae; Blautia; Coprococcus; Ruminococcus; Aerococcus; Anaerostipes; Bifidobacterium; Cloacibacillus; Coprococcus sp.; Erysipelatoclostridium; Erysipelotrichaceae; Exiguobacterium; Firmicutes; Holdemanella; Paenibacillus; Parabacteroides; Streptococcus; Adlercreutzia; Desulfovibrio; Allobaculum; Alloprevotella; Bacteroides; Bacteroidetes; Erysipelotrichales; Helicobacter; Prevotellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Constipation (present),Anaerotruncus; Firmicutes; Clostridium; Bifidobacterium; Faecalibacterium; Streptococcus; Lactobacillus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,present
Core Microbiome (Airway) (Increase),"Actinobacillus ureae ATCC 25976; Bacteroidetesal taxon 274 F0058; Achromobacter piechaudii ATCC 43553; Achromobacter xylosoxidans C54; Acinetobacter haemolyticus ATCC 19194; Anaeroglobusminatus F0357; Brevundimonas diminuta 470-4; Klebsiella pneumoniae rhinoscleromatis ATCC 13884; Neisseria meningitidis. B ATCC 13091; Pasteurella dagmatis ATCC 43325; Staphylococcus aureus aureus ATCC 51811; Staphylococcus aureus aureus ATCC BAA-39; Streptococcus anginosus F0211; Streptococcus infantis SK959, GTC 849; Neisseria.al taxon 020 F0370; Neisseria bacilliformis ATCC BAA-1200; Neisseria wadsworthii 9715; Neisseriaayeganii 871; Turicibacter. HGF1; Streptococcus parasanguinis F0405",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Microbiome Gut (faecal) (Increase),"Acinetobacter junii SH205; Aneurinibacillus aneurinilyticus ATCC 12856; Pseudoflavonifractorpillosus ATCC 29799; Bacteroides cellulosilyticus DSM 14838; Bacteroidesprophilus DSM 18228, JCM 13818; Bacteroides ovatus ATCC 8483; Bacteroides. 1_1_6; Parabacteroides. 2_1_7; Bacteroides. 2_2_4; Bacteroides. 3_2_5; Bacteroides. 4_3_47FAA; Bacteroides. 9_1_42FAA; Bacteroides. D1; Bacteroides. D2; Bacteroides dorei 5_1_36/D4; Parabacteroides merdae ATCC 43184; Bifidobacterium breve DSM 20213, JCM 1192; Bifidobacterium catenulatum DSM 16992, JCM 1194, LMG 11043; Citrobacter.; Paenibacillus. 4_7_47FAA; Parabacteroides goldsteinii WAL 12034; Citrobactereundii 4_7_47CFAA; Megamonasniformis YIT 11815; Porphyromonas. 31_2; Ralstonia. 5_7_47FAA",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Microbiome Gut (Intestinal microflora) (Increase),"Gardnerella vaginalis JCM 11026; Enterococcus faecalis TUSoD Ef11; Enterococcus faecium PC4.1; Actinomycesontolyticus ATCC 17982; Actinomycesontolyticus C702; Lactobacillus salivarius HO66, ATCC 11741; Actinomycesontolyticus F0309; Actinomyces.al taxon 848 F0332; Parvimonas micra ATCC 33270; Acidaminococcus. D21; Bacteroides caccae ATCC 43185; Bifidobacteriumllicum DSM 20093, LMG 11596; Escherichiali 83972; Faecalibacterium prausnitzii A2-165; Klebsiella. 1_1_55; Lactobacillus helveticus DSM 20075; Methanobrevibacter smithii DSM 2375; Bacteroides. A01; Bifidobacterium breve DSM 20213, JCM 1192; Clostridium innocuum JCM 1292; Coprococcus comes SL7/1; Escherichiali SE11; Roseburiaecis 11SE37; Roseburiaecis CC123; Roseburia intestinalis XB6B4; Alistipes shahii WAL 8301; Bacteroides. D20; Clostridium innocuum 6_1_30; Clostridium. 1_1_41A1FAA; Lachnospiraceae bacterium 6_1_63FAA; Synergistes. 3_1_syn1; Bacteroides. 4_1_36; Anaerostipes. 3_2_56FAA; Bacillus. BT1B_CT2; Bacillus. 7_6_55CFAA_CT2; Bacillusithii 7_3_47FAA; Bacteroides eggerthii 1_2_48FAA; Bacteroides ovatus 3_8_47FAA; Bacteroides. 2_1_56FAA; Campylobacter. 10_1_50; Clostridium. 7_3_54FAA; Lactobacillus. 7_1_47FAA; Peptococcus. 2_1_54CFAA_CT1; Pseudomonas. 2_1_26; Subdoligranulum. 6_1_47FAA; Subdoligranulum. 4_3_54A2FAA; Tannerella. 6_1_58FAA_CT1; Bacteroides. 1_1_14; Bacteroides. 20_3; Bacteroides. 3_1_13; Bacteroides. 3_1_23; Bacteroides. 3_1_40A; Bacteroidetes bacteriumal taxon 272 F0290; Pediococcus acidilactici 7_4; Enterobacteroacaeoacae NCTC 9394; Clostridiumostridioforme JCM 1291; Clostridium. HGF2; Paenibacillus. HGF5; Paenibacillus. HGF7; Neisseria macacae ATCC 33926; Acidaminococcus. 4_1_13_G; Barnesiella intestinihominis YIT 11860; Sutterella wadsworthensis 2_1_59BFAA; Fusobacterium necrophorumnduliforme 1_1_36S; Enterococcus saccharolyticus 30_1; Bacteroides ovatus SD CMC 3f; Bacteroides ovatus SD CC 2a; Alistipes. HGB5; Alistipes putredinis DSM 17216; Alistipes. 10_1_37FAA; Anaerococcus hydrogenalis DSM 7454; Anaerofustisercorihominis DSM 17244; Anaerostipesccae DSM 14662; Clostridium bolteae ATCC BAA-613; Clostridium. L2-50; Clostridium hathewayi DSM 13479; Clostridium hiranonis TO-931 DSM 13275; Clostridium hylemonae DSM 15053; Clostridium. SS2/1; Clostridium leptum DSM 753; Clostridium methylpentosum R2, DSM 5476; Clostridium nexile DSM 1787; Clostridium. A2-232; Clostridium M62/1; Clostridiumindens ATCC 35704; Clostridiumiroforme DSM 1552; Clostridiumorogenes ATCC 15579; Clostridium symbiosum ATCC 14940; Collinsella aerofaciens ATCC 25986; Coprococcus comes ATCC 27758; Coprococcus eutactus ATCC 27759; Desulfovibrio piger GOR1; Dorea formicigenerans ATCC 27755; Dorea longicatena DSM 13814; Edwardsiella tarda ATCC 23685; Eubacterium biforme DSM 3989; Eubacterium. L2-7, DSM 17630; Eubacterium hallii DSM 3353; Flavonifractor plautii ATCC 29863; Eubacterium ventriosum ATCC 27560; Faecalibacterium prausnitzii M21/2; Methanobrevibacter smithii F1, DSM 2374; Mitsuokella multacida DSM 20544; Proteus penneri ATCC 35198; Providencia alcalifaciens. 019:H2 DSM 30120; Providencia rettgeri DSM 1131; Providencia rustigianii DSM 4541; Providenciauartii ATCC 25827; Ruminococcus callidus ATCC 27760; Ruminococcus gnavus ATCC 29149; Blautia hydrogenotrophica DSM 10507; Ruminococcus lactaris ATCC 29176; Blautia obeum ATCC 29174; Ruminococcus torques ATCC 27756; Streptococcus infantarius infantarius ATCC BAA-102; Subdoligranulum variabile DSM 15176; Enterobacterncerogenus ATCC 35316; Coprococcus catus GD/7; Coprococcus. ART55/1; Escherichiali O150:H5 SE15; Roseburia intestinalis M50/1; Succinatimonas hippei YIT 12066; Bacteroidesarus YIT 12056; Bacteroidesuxus YIT 12057; Bacteroideseiciplenus YIT 12058; Alistipes indistinctus YIT 12060; Dialisterccinatiphilus YIT 11850; Streptococcus anginosus 1_2_62CV; Clostridiumbiscindens 1_3_50AFAA; Clostridiumostridioforme 2_1_49FAA; Clostridium aldenense WAL-18727; Clostridiumtroniae WAL-17108; Clostridiumtroniae WAL-19142; Clostridiumostridioforme WAL-7855; Clostridium bolteae WAL-14578; Clostridium hathewayi WAL-18680; Clostridium symbiosum WAL-14163; Clostridium symbiosum WAL-14673; Clostridium perfringens WAL-14572; Bacteroides intestinalis 341, DSM 17393; Anaerotruncuslihominis DSM 17241; Bacteroides coprocola M16, DSM 17136; Bacteroides dorei DSM 17855; Bacteroides eggerthii DSM 20697; Bacteroides finegoldii DSM 17565; Bacteroides pectinophilus ATCC 43243; Bacteroides plebeius M12, DSM 17135; Bacteroides. 1_1_30; Bacteroides stercoris ATCC 43183; Bifidobacterium adolescentis L2-32; Bifidobacterium angulatum DSM 20098; Bifidobacterium bifidum ATCC 29521; Bifidobacterium bifidum NCIMB 41171; Bifidobacterium dentium ATCC 27678; Bifidobacterium longum longum ATCC 55813; Bilophila. 4_1_30; Bilophila wadsworthia 3_1_6; Marvinbryantiarmatexigens I-52; Butyrivibrio crossotus DSM 2876; Catenibacterium mitsuokai DSM 15897; Cedecea davisae 005, DSM 4568; Cetobacteriummerae ATCC BAA-474; Citrobacter. 30_2; Citrobacter youngae ATCC 29220; Clostridium asparagiforme DSM 15981; Clostridium bartlettii DSM 16795; Clostridiumlatum DSM 1785; Clostridium difficile NAP07; Clostridium difficile NAP08; Desulfitobacterium hafniense DP7; Desulfovibrio piger ATCC 29098; Parabacteroides johnsonii DSM 18315; Parabacteroides. D13; Prevotella copri CB7, DSM 18205; Roseburia intestinalis L1-82; Blautia hansenii VPI C7-24, DSM 20583; Bifidobacterium angulatum JCM 7096; Bifidobacterium bifidum JCM 1255; Ruminococcus bromii L2-63; Parabacteroides. D25; Parabacteroides. D26; Phascolarctobacterium. 3_1syn4; Phascolarctobacterium. YIT 12067; Odoribacter laneus YIT 12061; Collinsella tanakaei YIT 12063; Collinsella. 1_1_44A2FAA; Collinsella. 4_8_47FAA; Lactobacillus rhamnosus GG; Bacteroides uniformis ATCC 8492; Eubacterium siraeum DSM 15702",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Microbiome Oral Cavity (Increase),"Dialister micraerophilus DSM 19965; Dialister microaerophilus UPII-345-E; Gardnerella vaginalis HMP9231; Leptotrichia hofstadii F0254; Leptotrichiaodfellowii D28; Leptotrichia wadei F0279; Leptotrichia.al taxon 225 F0581; Abiotrophia defectiva ATCC 49176; Atopobium rimae ATCC 49626; Eubacterium infirmum F0142; Filifactor alocis ATCC 35896; Fusobacterium periodonticum D10; Gemella haemolysans ATCC 10379; Gemella haemolysans M341; Gemella moribillum M424; Gemella sanguinis M325; Neisserianerea ATCC 14685; Neisseria elongataycolytica ATCC 29315; Neisseriaavescens NRL30031/H210; Neisseriaavescens SK114; Neisseria lactamica ATCC 23970; Neisseria mucosa M26, ATCC 25996; Neisseria mucosa C102; Neisseria polysaccharea ATCC 43768; Neisseriacca ATCC 29256; Neisseria flava NJ9703; Paenibacillus. D14; Peptoniphilus lacrimalis 315-B; Peptoniphilus. F0131; Porphyromonas endodontalis ATCC 35406; Prevotella bivia; Prevotella buccae D17; Prevotella buccalis ATCC 35310; Prevotella disiens VPI 8057; Prevotella melaninogenica ATCC 25845; Prevotella melaninogenica D18; Prevotella melaninogenica; Prevotella nigrescens F0103; Prevotella oralis ATCC 33269; Prevotella oris C735; Prevotella. C561; Prevotella. F0108; Prevotella tannerae ATCC 51259; Rothia dentocariosa ATCC 17931; Rothia dentocariosa M567; Rothia mucilaginosa ATCC 25296; Rothia mucilaginosa M508; Rothia aeria F0184; Treponemacranskiicranskii VPI DR56BR1116; Veillonella atypica KON, ATCC 17744; Veillonella dispar ATCC 17748; Bifidobacterium dentium JCM 1195; Prevotella oris F0302; Prevotella veroralis F0319; Bacillus. 2_A_57_CT2; Veillonella parvula ATCC 17745; Porphyromonas. KLE 1280; Clostridium difficile 002-P50-2011; Clostridium difficile 050-P50-2011; Olsenella profusa F0195, D221A-01; Actinomycesorgiae F0490; Actinomyces massiliensis F0489; Capnocytophaga ochracea Holt 25; Capnocytophaga.al taxon 335 F0486; Capnocytophaga.al taxon 412 F0487; Porphyromonas gingivalis W50, ATCC 53978; Porphyromonas.al taxon 279 F0450; Rothia aeria F0474; Atopobium. BS2; Atopobium. ICM42b; Bifidobacterium. MSTE12; Lachnospiraceae bacterium MSX33; Eubacterium. OBRC9; Fusobacterium. CM21; Fusobacterium. CM1; Fusobacterium. ACC1; Fusobacterium. CM22; Fusobacterium. OBRC1; Klebsiella. AS10; Olsenella uli MSTE5; Oribacterium. ICM51; Prevotella. ICM33; Prevotella. ICM55; Shuttleworthia. MSX8B; Streptococcus. AC15; Streptococcus. ACC21; Streptococcus. CM7; Streptococcus. OBRC6; Streptococcus. BS29a; Streptococcus. AS20; Streptococcus. BS21; Streptococcus. CM6; Streptococcus. ACS2; Streptococcus. SR1; Streptococcus. SR4; Streptococcus. SR5; Veillonella. AS16; Actinomyces. ICM54; Prevotella. Oral Taxon 475 F0059; Providencia alcalifaciens F90-2004; Providencia alcalifaciens 205/92; Providencia alcalifaciens R90-1475; Providencia alcalifaciens RIMD 1656011; Providencia alcalifaciens PAL-1; Providencia alcalifaciens PAL-2; Providencia alcalifaciens PAL-3; Klebsiellaytoca OK-1; Klebsiellaytoca KA-2; Klebsiellaytoca KO-1; Prevotella.al taxon 376 F0043; Capnocytophaga ochracea F0287; Prevotella maculosa F0099; Prevotella. F0295; Actinomyces.al taxon 170 F0386; Actinomyces.al taxon 171 F0337; Actinomyces. F0384; Actinomyces.al taxon 181 F0379; Actinomyces.al taxon 448 F0400; Atopobium.al Taxon 810 F0209; Capnocytophaga.al taxon 338 F0234; Capnocytophaga.al taxon 324 F0483; Capnocytophaga.al taxon 326 F0382; Capnocytophaga.al taxon 329 F0087; Capnocytophaga.al taxon 332 F0381; Capnocytophaga.al taxon 380 F0488; Cardiobacterium valvarum F0432; Centipeda periodontii DSM 2778; Enterobacter hormaechei ATCC 49162; Enterococcussseliflavus ATCC 12755; Enterococcus italicus DSM 15952; Eubacterium brachy ATCC 33089; Eubacterium minutum ATCC 700079; Eubacteriumlci ATCC 35585; Fusobacterium.al taxon 370 F0437; Haemophilus aegyptius ATCC 11116; Haemophilus.al taxon 851 F0397; Lachnospiraceae bacterium bacteriumal taxon 082 F0431; Lactobacillusis F0423; Lactobacillus parafarraginis F0439; Lactobacillus kisonensis F0435; Olsenella profusa D315A-29, DSM 13989; Oribacterium.al taxon 108 F0425; Parvimonas.al taxon 110 F0139; Parvimonas.al taxon 393 F0440; Peptoniphilus indolicus. Type C; Peptoniphilus. F0436; Peptoniphilus. F0141; Prevotella baroniae F0067; Prevotella denticola F0289; Prevotella histicola F0411; Prevotella micans F0438; Prevotella multiformis DSM 16608; Prevotella pallens ATCC 700821; Prevotella salivae F0493; Prevotella. F0091; Prevotellaccharolytica F0055; Propionibacterium propionicum F0230a; Scardovia wiggsiae F0424; Selenomonas. F0473; Selenomonas.al taxon 137 F0430; Selenomonas.al taxon 138 F0429; Selenomonas.al taxon 149 67H29BP; Streptococcus agalactiae ATCC 13813; Streptococcus downei F0415; Streptococcus intermedius F0413; Streptococcus mitis bv. 2 F0392; Streptococcus peroris ATCC 700780; Streptococcus.al taxon 056 F0418; Streptococcus.al taxon 058 F0407; Streptococcus. F0442; Streptococcus. F0441; Streptococcus.al taxon 071 73H25AP; Streptococcus vestibularis F0396; Treponema lecithinolyticum ATCC 700332; Treponema maltophilum ATCC 51939; Treponema medium ATCC 700293; Veillonella.al taxon 158 F0412; Veillonella. F0422; Synergistetes bacterium SGP1; Actinomyces europaeus ACS-120-V-Col10b; Capnocytophaga granulosa ATCC 51502; Johnsonella ignava ATCC 51276; Selenomonas infelix ATCC 43532; Treponema denticola F0402; Streptococcusistatus F0329; Prevotella nigrescens ATCC 33563; Prevotella salivae DSM 15606; Streptococcus australis ATCC 700641; Streptococcusistatus ATCC 51100; Streptococcus vestibularis ATCC 49124; Megasphaera micronuciformis F0359; Solobacterium moorei F0204; Prevotella oulorum F0390; Selenomonas artemidis F0399; Oribacterium. ACB7; Oribacterium. ACB1; Peptostreptococcaceae bacterium CM5; Peptostreptococcaceae bacterium ACC19a; Peptostreptococcaceae bacterium CM2; Streptococcus intermedius F0395; Prevotella maculosa OT 289; Streptococcusistatus SK231; Enterococcus faecalis TUSoD Ef11; Enterococcus faecium PC4.1; Actinomycesontolyticus ATCC 17982; Actinomycesontolyticus C702; Lactobacillus salivarius HO66, ATCC 11741; Actinomycesontolyticus F0309; Actinomyces.al taxon 848 F0332; Bacteroidetesal taxon 274 F0058; Propionibacterium avidum VPI 0179; Campylobacteracilis ATCC 33236; Campylobacter rectus RM3267, CCUG 20446; Campylobacterowae RM3277; Capnocytophaga gingivalis ATCC 33624; Capnocytophagautigena Capno, ATCC 33612; Prevotella stercorea DSM 18206",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Microbiome Skin (Increase),"Acinetobacter junii SH205; Acinetobacterlcoaceticus RUH2202; Acinetobacter. SH024; Acinetobacter. RUH2624; Acinetobacter johnsonii SH046; Acinetobacter lwoffii SH145; Acinetobacter radioresistens SH164; Acinetobacter radioresistens SK82; Lactobacillus jensenii 208-1; Corynebacterium pseudodiphtheriticum; Acinetobacter baumannii 6013113; Acinetobacter baumannii 6013150; Acinetobacter baumannii 6014059; Acinetobacter. ATCC 27244; Actinomycesaevenitzii C83; Actinomyces viscosus C505; Anaerococcus.; Dermacoccus. Ellin185; Enhydrobacter aerosaccus SK60; Prevotella disiens; Prevotella.; Propionibacterium acnes SK137; Fusobacterium. D11; Propionibacterium acidifaciens F0233; Staphylococcuspitis SK14; Staphylococcusprae C87; Staphylococcus hominis hominis C80; Staphylococcus hominis SK119; Streptococcus agalactiae; Actinomyces. F0330; Propionibacterium. 5_U_42AFAA; Propionibacterium acnes SK187; Propionibacterium acnes SK182B-JCVI; Corynebacteriummulans; Kingella denitrificans ATCC 33394; Propionibacterium acnes SK182; Propionibacterium acnes J139; Propionibacterium acnes J165; Propionibacterium acnes HL096PA3; Propionibacterium acnes HL096PA2; Propionibacterium acnes HL103PA1; Propionibacterium acnes HL099PA1; Propionibacterium acnes HL097PA1; Staphylococcus warneri L37603, SK66; Finegoldia magna ATCC 29328; Propionibacterium acnes JCVI192; Propionibacterium avidum VPI 0179; Acinetobacter baumannii ATCC 19606, CIP 70.34",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Microbiome Vaginal (Increase),"Actinomyces urogenitalis DSM 15434; Actinomycesleocanis DSM 15436; Anaerococcus lactolyticus ATCC 51172; Anaerococcus tetradius ATCC 35098; Bifidobacterium dentium JCVIHMP022; Corynebacterium aurimucosum CN-1, ATCC 700975; Lactobacillusleohominis 101-4-CHN; Lactobacillusleohominis DSM 14060; Lactobacillus crispatus MV-1A-US; Lactobacillus crispatus MV-3A-US; Lactobacillus crispatus SJ-3C-US; Lactobacillusrmentum ATCC 14931; Lactobacillusrmentum 28-3-CHN; Lactobacillus iners UPII 143-D; Lactobacillus iners UPII 60-B; Lactobacillus jensenii 1153; Lactobacillus jensenii 27-2-CHN; Lactobacillus jensenii SJ-7A-US; Sphingobacteriumiritivorum ATCC 33300; Veillonella montpellierensis; Lactobacillus jensenii 269-3; Lactobacillus gasseri 202-4; Lactobacillus crispatus 214-1; Lactobacillus jensenii 115-3-CHN; Lactobacillus crispatus 125-2-CHN; Lactobacillus gasseri SV-16A-US; Lactobacillus johnsonii 135-1-CHN; Lactobacillus gasseri 224-1; Lactobacillus iners SPIN 1401G; Lactobacillus iners LactinV 01V1-a; Lactobacillus iners LactinV 03V1-b; Lactobacillus iners LactinV 09V1-c; Lactobacillus iners LactinV 11V1-d; Lactobacillus iners SPIN 2503V10-D; Lactobacillus iners LEAF 2053A-b; Lactobacillus iners LEAF 2052A-d; Lactobacillus iners LEAF 2062A-h1; Lactobacillus iners LEAF 3008A-a; Lactobacillus iners ATCC 55195; Peptoniphilus duerdenii ATCC BAA-1640; Bifidobacterium breve ACS-071-V-Sch8b; Actinobaculum massiliae ACS-171-V-Col2; Actinobaculumhaalii FB123-CNA-2; Actinomyces hongkongensis FB160-CNA-8; Actinomyces neuii BVS029A5; Actinomyces turicensis ACS-279-V-Col4; Aerococcus urinae ACS-120-V-Col10a; Anaerococcus hydrogenalis ACS-025-V-Sch4; Atopobium vaginae PB189-T1-4; Lactobacillus crispatus FB077-07; Lactobacillus crispatus FB049-03; Campylobacter ureolyticus ACS-172-V-Col6; Eremococcusleocola ACS-139-V-Col8; Facklamia hominis ACS-120-V-Sch10; Finegoldia magna ACS-171-V-Col3; Lactobacillus delbrueckii bulgaricus PB2003/044-T3-4; Lactobacillusis PB013-T2-3; Lactobacillus salivarius ACS-116-V-Col5a; Mobiluncus mulieris FB024-16; Staphylococcus epidermidis BVS058A4; Veillonella ratti ACS-216-V-Col6b; Peptoniphilus harei ACS-146-V-Sch2b; Finegoldia magna BVS033A4; Anaerococcus prevotii ACS-065-V-Col13; Porphyromonas asaccharolytica PR426713P-I; Prevotella disiens FB035-09AN; Prevotella amnii; Prevotella denticola CRIS 18C-A; Prevotella timonensis; Propionimicrobium lymphophilum ACS-093-V-SCH5; Enterococcus durans FB129-CNAB-4; Staphylococcus lugdunensis ACS-027-V-Sch2; Campylobacter ureolyticus ACS-301-V-Sch3b; Staphylococcusmulans ACS-120-V-Sch1; Streptococcus urinalis FB127-CNA-2; Streptococcus equinus ATCC 700338; Streptococcus pseudoporcinus SPIN 20026; Veillonella atypica ACS-049-V-Sch6; Veillonella parvula ACS-068-V-Sch12; Candidaabrata CAB52-4041; Candida tropicalis CAB54-6763-3; Candida parapsilosis CAB50-2638; Alloprevotella rava F0323; Finegoldia magna HMS01; Veillonella atypica ACS-134-V-Col7a; Atopobium vaginae DSM 15829; Roseomonasrvicalis ATCC 49957",PubMed,1.7 - Compositional State Microbiome,Strain,NA,NA,NA,NA,Whole Genome Sequencing,Increase
Core Subgingival (N/A),Streptococcus HOT.064; Streptococcus mitis; Streptococcus australis; Streptococcus peroris; Gemella haemolysans; Veillonella parvula; Granulicatella adiacens; Streptococcus HOT.071; Gemella morbillorum; Streptococcus HOT.486; Streptococcus sanguinis; Gemella sanguinis; Streptococcus intermedius; Fusobacterium nucleatum; Corynebacterium matruchotii; Kingella oralis; Prevotella melaninogenica; Fusobacterium HOT.205; Terrahaemophilus aromaticivorans; Capnocytophaga leadbetteri; Porphyromonas HOT.279; Campylobacter gracilis; Actinomyces HOT.175; Fusobacterium periodocnticum; Porphyromonastoniae; Haemophilus parainfluenzae; Haemophilus haemolyticus; Veillonella HOT.780; Streptococcus HOT.487; Streptococcusistatus; Actinomyces naeslundii; Neisseria; Lautropia mirabilis; Enterococcus casseliflavus; Abiotrophia defective; Capnocytophaga gingivalis; Neisseria elongata; Eikenella corrodens; Neisseria flavescens; Leptotrichia buccalis; Capnocytophaga sputigena; Leptotrichia HOT.212; Veillonella rogosae; Neisseria mucosa; Rothia aeria; Corynebacterium durum; Prevotella HOT.317; Actinomyces HOT.169; Leptotrichia HOT.879; Neisseria pharynges; Rothia dentocariosa; Bergeyella HOT.322; Streptococcus stellatus; Veillonella atypica; Streptococcus salivarius; Leptotrichia hongkongenesis; Prevotella HOT.472; Actinomyces HOT.171; Campylobacter concisus; Streptococcus oralis; Veillonella dispar; Alloprevotella HOT.473; Streptococcus gordonii; Lachnoanaerobaculum umeaense; Streptococcus pneumoniae; Streptococcus infantis; Streptococcus HOT.431; Streptococcus HOT.074; Neisseria meningitidis; Neisseria flava; Neisseria java; Leptotrichia HOT.225; Campylobacter showae; Aggregatibacter HOT.458; Porphyromonas HOT.284; Aggregatibacter HOT513; Leptotrichia shahii; Haemophilus HOT.036; Aggregatibacter segnis; Haemophilus HOT.908; Aggregatibacter HOT.512; Pseudomonas fluorescens; Fusobacterium naviforme; Prevotella oris; Eubacterium [XIVa][G-1]; Selenomonas noxia; Prevotella oulorum; Selenomonas dianae; Fusobacterium HOT.203; Catonella morbi; Selenomonas infelix,PubMed,1.7 - Compositional State Microbiome,Species,NA,NA,NA,NA,"16S rRNA - V4 region, Illumina MiSeq",N/A
Coronary Artery Disease (Increase),Lactobacillales; Prevotella�intermedia; Bacteroides�dorei; Veillonella dispar,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Coronary Artery Disease (Negative correlation with Cardiac Valve Calcification),Bacteroides�plebeius; Blautia; Collinsella�aerofaciens; Dorea; Lactobacillus; Megamonas,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Negative correlation with Cardiac Valve Calcification
Coronary Artery Disease (Positive correlation with Coronary Artery Disease),Bacteroides�plebeius; Fusobacterium; Megamonas; Megasphaera; Parabacteroides distasonis,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Positive correlation with Coronary Artery Disease
Coronary Artery Disease and Type-2 Diabetes Mellitthem (decrease),Bacteroidaceae; Bacteroides; Faecalibacterium; Lachnospiraceae; Odoribacteraceae; Paraprevotellaceae; Prevotella; Prevotellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Coronary Artery Disease and Type-2 Diabetes Mellitthem (Increase),Desulfovibrio; Desulfovibrionaceae; Dialister; Enterobacter; Enterobacteriaceae; Megasphaera; Rikenellaceae; Streptococcaceae; Streptococcus; Veillonellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Coronary Disease; Male (increase),Coprococcus catus; Methanobrevibacter; Phocaeicola plebeius; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Coronary Disease; Male; BMI (increase),Bifidobacterium adolescentis; Coprococcus catus; Holdemanella biformis; Oxalobacter formigenes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,increase
Crohn Disease (decrease),Fungus; Akkermansia; Alistipes; Coprococcus; Dorea; Eubacterium; Prevotella; Roseburia; Ruminococcus; Veillonella; Collinsella; Enterorhabdus; Gordonibacter; Bacteroidetes; Anaerostipes; Blautia; Faecalibacterium; Lachnospira; Odoribacter; Bifidobacterium; Streptococcus; Bacteroides�xylanolyticus; Bifidobacterium catenulatum; Blautia ruminococcus; Clostridium perfringens; Clostridium�disporicum; Intestinibacter�bartlettii; Roseburia�cecicola; Streptococcus salivarius; Clostridium; Firmicutes; Desulfovibrio; Barnesiella; Parabacteroides; Porphyromonadaceae; Cyanobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Crohn Disease (Increase),Enterococcus; Escherichia; Klebsiella; Odoribacter; Parabacteroides; Clostridium; Turicibacter; Faecalibacterium prausnitzii; Oscillospira; Ruminococcaceae; Candida tropicalis; Escherichia coli; Ruminococcus; Serratia marcescens; Enterobacteriaceae; Fusobacterium; Haemophilus; Neisseria; Veillonella; Bifidobacterium; Enterococcus avium; Enterococcus faecalis; Ruminococcus gnavus; Clostridiales; Dorea; Firmicutes; Peptostreptococcus; Proteobacteria; Sphingomonadaceae; Bacteroidetes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Crohn's Disease (CD, increase)",Clostridium leptum; Bacteroides status; Bacteroides uniformis; Bacteroides vulgatus; Enterobacteriaceae; Faecalibacterium prausnitzii; Firmicutes; Enterococcus faecium; Escherichiali; Bacteroidales; Clostridiales; Erysipelotrichales; Fusobacteriaceae; Veillonellaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.405.205.731.500; C06.405.469.432.500,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,16S rRNA - Real-Time qPCR,Increase
Crohn's Disease (g_decrease),Bacteroides; Flavobacterium; Prevotella; Faecalibacterium; Oscillospira,PubMed,1.6 - Disease Signature,Genus,NA,NA,C06.405.205.731.500; C06.405.469.432.500,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,"16S rRNA - V3-V4 regions, Illumina MiSeq",Decrease
Crohn's Disease (increase),Bacteroides vulgatus; Bacteroides caccae; Bifidobacterium bifidum; Bifidobacterium longum; Bifidobacterium adolescentis; Bifidobacterium dentum; Blautia hansenii; Ruminococcus gnavus; Clostridium nexile; Faecalibacterium prausnitzii; Ruminoccus torques; Clostridium bolteae; Eubacterium rectale; Roseburia intestinalis; Coprococcus comes; Escherichiali; Fusobacterium nucleatum; Haemophilus parainfluenzae; Veillonella parvula; Eikenella corrodens; Gemella moribillum,PubMed,1.6 - Disease Signature,Species,NA,NA,C06.405.205.731.500; C06.405.469.432.500,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,16S rRNA - Real-Time qPCR,Increase
Cystic Fibrosis (decrease),Bacteroides; Faecalibacterium; Lactobacillus helveticus; Lactobacillus casei; Bilophila; Clostridium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Cystic Fibrosis (decrease),Alcaligenaceae; Bacteroidetes; Bifidobacteriaceae; Bifidobacterium; Cyanobacteria; Faecalibacterium; Lentisphaerae; Odoribacter; Peptococcaceae; Prevotella; Prevotellaceae; Proteobacteria; RF3; Roseburia; Tenericutes; Verrucomicrobia; Faecalibacterium prausnitzii; Butyricimonas; Oscillospiraceae; Sutterella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Cystic Fibrosis (Increase),Coxiellaceae; Lysobacter; Rickettsiales; Staphylococcus aureus; Stenotrophomonas maltophilia; Streptococcus mitis; Xanthomonas; Burkholderia; Lactobacillus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.689.202; C08.381.187; C16.320.190; C16.614.213,NA,16S rRNA - Real-Time PCR,Increase
Cystic Fibrosis (Increase),Pseudomonas aeruginosa; Bifidobacterium bifidum; Bifidobacterium longum; Bifidobacterium Pseudocatenulatum; Eubacterium; Faecalibacterium prausnitzii; Lactobacillus; Lactobacillus brevis; Lactobacillus delbrueckii; Lactobacillus fermentum; Butyricimonas; Ruminococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Cystic Fibrosis (increase),Actinobacteria; Bacteroides; Enterococcus; Firmicutes; Leuconostoc; Fusobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Decompensated hepatitis B virus cirrhosis (decrease),Bifidobacterium; Enterococcus faecalis; Faecalibacterium prausnitzii; Peptostreptococcaceae; Solobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Dental plaque (Increase),Porphyromonas gingivalis ATCC 33277; Gemella haemolysans ATCC 10379; Gemella haemolysans M341; Gemella moribillum M424; Gemella sanguinis M325,PubMed,1.6 - Disease Signature,Strain,NA,NA,C07.793.208.377,NA,Whole Genome Sequencing,Increase
Depression (increase),Alistipes; Oscillibacter; Bacteroidales; Cyanobacteria; Firmicutes,PubMed,1.6 - Disease Signature,Genus; mixed,NA,NA,F01.145.126.350,608516,16S rRNA - Illumina MiSeq; 16s rRNA gene sequencing,Increase; increase
"Depressive Disorder, Major (decrease)",Bacteroidetes; Agathobacter; Bifidobacterium; Blautia; Butyricicoccus; Coprococcus 3; Coriobacteriales; Dorea; Faecalibacterium; Fusicatenibacter; Lachnospiraceae ND3007 group; Roseburia; Ruminococcaceae UCG-013; Ruminococcus 1; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Depressive Disorder, Major (increase)",Clostridium XI; Firmicutes; Klebsiella; Prevotella; Streptococcus; Anaeroglobus; Escherichia/Shigella sp.; Lachnoclostridium; Lachnospiraceae UCG-006; Parabacteroides,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Diabetes Mellitus (decrease),Bacteroidetes; Lachnospiraceae; Ruminococcaceae; Lactobacillus; Prevotella; Firmicutes; Roseburia; Bacteroides; Bifidobacterium; Clostridium coccoides; Bacteroides acidifaciens; Flavonifractor; Flavonifractor plautii; Lachnoclostridium; Ruminococcus gnavus; Akkermansia; Enterobacteriaceae; Clostridiales; Helicobacter; Rhodobacteraceae; Verrucomicrobiaceae; Blautia; Faecalibacterium; Lachnospira; Ruminococcus; Veillonella; Adlercreutzia; Anaerococcus; Finegoldia; Sneathia; Alistipes; Bacteroidales S24-7 group; Alishewanella; Pseudoclavibacter; Sediminibacterium; Allobaculum; Turicibacter; Faecalibacterium prausnitzii; Shigella; Rikenellaceae; Erysipelotrichaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diabetes Mellitus (Increase),Aspergillus; Candida; Firmicutes; Lactobacillus; Bacteroides; Bacteroidetes; Parabacteroides; Roseburia; Anaerotruncus; Prevotella; Victivallis; Christensenellaceae; Christensenellaceae R7; Mollicutes; Prevotella 9; Ruminoclostridium 6; Ruminococcaceae UCG 010; Enterobacteriaceae; Escherichia coli; Faecalibacterium prausnitzii; Akkermansia; Bacteroidales; Tenericutes; Verrucomicrobia; Lachnospiraceae; Odoribacter; S24-7; Bifidobacterium; Desulfovibrionales; Erysipelotrichales; Bacteroides rodentium; Bacteroides vulgatus; Prevotella copri; Blautia; Lachnospira; Ruminococcus; Streptococcus; Bacteroides fragilis; Oscillospira; Lachnospiraceae NK4A136; Ruminococcaceae UCG-014; Parabacteroides distasonis; Actinotalea; Aquabacterium; Pseudonocardia; Xanthomonas; Parabacteroides goldsteinii; Lactobacillales; Prevotella_9; Allobaculum; Helicobacter; Norank_f_Bacteroidales_S24-7_group; Romboutsia; Clostridiales; Dorea; Akkermansia muciniphila; Bifidobacterium pseudolongum; Ruminococcaceae; Faecalibacterium; Helicobacter pylori; Lactobacillus casei; Lactobacillus fermentum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Diabetes Mellitus, Type 1 (decrease)",Lactobacillus; Staphylococcus; Acidaminococcus; Caulobacterales; Dialister; Haemophilus; Intestinimonas; Lachnospira; Micrococcales; Pasteurellaceae; Pasteurellales; HbA1c; Oscillospiraceae; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Diabetes Mellitus, Type 2 (decrease)",Bifidobacterium longum; Enterococcus casseliflavus; Bacteroides; Bacteroidetes; Bifidobacterium; Actinobacteria; Alistipes; Odoribacter; Turicibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Diabetes Mellitus, Type 2 (increase)",Enterococcus faecalis; Clostridiaceae 02d06; Prevotella; Firmicutes; Lactobacillus; Bifidobacterium; Akkermansia; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Diabetes Mellitus, Type 2; 8 weeks (increase)",Bradyrhizobiaceae; Coriobacteriaceae; Ochrobactrum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Diabetes Mellitus, Type 2; Overweight (decrease)",Roseburia; Faecalibacterium; Bacteroides; Lachnospira; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Diabetes Mellitus, Type 2; Overweight (increase)",Ruminococcus; Collinsella; Streptococcus; Enterobacteriaceae; Lactobacillus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Diabetes Mellitus,Type 2 (decrease)",Bifidobacterium; Phocaeicola vulgatus; Clostridia; Firmicutes; Bacteroides,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Diabetes Mellitus,Type 2 (increase)",Bacteroidetes; Betaproteobacteria; Collinsella; Dorea; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Diabetes; Pregnant Women (decrease),Butyrivibrio; Alistipes; Christensenella; Holdemanella; Enterorhabdus; Oscillibacter; Lachnospiraceae incertae sedis; Ethanoligenens; Anaerovorax; Faecalibacterium; Blautia; Anaerostipes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diabetes; Pregnant Women (increase),Intestinibacter; Roseburia; Flavonifractor; Barnesiella; Parabacteroides; Escherichia/Shigella sp.; Bacteroides,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Diabetic Nephropathies (decrease),Bacteroidetes; Firmicutes; Lactobacillus; Prevotella; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diabetic Neuropathies (decrease),Akkermansia; Alistipes; Dubosiella; Parabacteroides; Parasutterella; Turicibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diabetic Neuropathies (increase),Aerococcus; Angelakisella; Blautia; Butyricicoccus; Lachnoclostridium; Staphylococcus; unclassified Oscillospiraceae; unidentified Corynebacteriaceae; unclassified Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Diabetic Retinopathy (decrease),Clostridium; Lactobacillus; Oscillospira; Ruminococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diabetic Retinopathy (Increase),Akkermansia; Allobaculum; Bacteroides; Bifidobacterium; Turicibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Diarrhea (decrease),Blautia; Dialister; Dorea; Sporobacterium WAL 1855D; Clostridiaceae; Lachnospiraceae; Ruminococcaceae; Bacteroides; Eubacterium; Lactobacillus; Oscillospira; Parabacteroides; Paraprevotella; Bifidobacterium pseudocatenulatum; Blautia hansenii; Catenibacterium; Coprococcus; Roseburia; Subdoligranulum; Bifidobacterium; Faecalibacterium prausnitzii; Bacillus subtilis C-3102; Lachnospira; Clostridium; Escherichia; Anaerostipes; Erysipelatoclostridium; Intestinibacter; Lachnoclostridium; Lachnospiraceae Ucg-008; Lactococcus; Enterobacter; Klebsiella; Salmonella; Selenomonas; Allobaculum; Clostridiales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diarrhea (Increase),Achromobacter; Cetobacterium; Fusobacterium; Lactobacillus; Actinobacillus; Lactobacillaceae; Pseudobutyrivibrio; Streptococcus; Lachnospiraceae; Prevotella; Ruminocacaceae; Clostridium; Epulopiscium; Sutterella; Actinomyces; Escherichia; Fusobacterium mortiferum; Gemella; Enterobacteriaceae; Methanobrevibacter; Citrobacter werkmanii; Enterobacter cloacae; Escherichia albertii; Parasutterella excrementihominis; Pseudocitrobacter; Yersinia enterocolitica; Bifidobacterium; Coprococcus-G2; Blautia; Peptoclostridium; Pseudomonas; Ruminococcaceae Ucg-014; Ruminococcus; Citrobacter; Enterobacter; Klebsiella; Lactococcus; Leuconostoc; Megasphaera�elsdenii; Salmonella; Bacteroides; Anaerotruncus; Desulfovibrio; Parabacteroides; Campylobacter; Megasphaera; Bacteroides Fragilis Strain Zy-312; Allobaculum; Clostridiales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Diarrhea (increase),Blautia; Enterobacteriaceae; Enterococcus; Erysipelotrichaceae; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Diarrhea; Kidney Transplantation (decrease),Bacteroidales; Bacteroides; Coprococcus; Dorea; Ruminococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Diverticular Diseases (decrease),Clostridium Iv; Clostridium Ix; Fusobacterium; Lactobacillaceae; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Drug Resistant Epilepsy (decrease),Bacteroides; Bifidobacterium; Prevotella; Atopobium; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Drug Resistant Epilepsy (Increase),Cronobacter; Proteobacteria; Actinobacteria; Alistipes; Bacteroidetes; Clostridiales; Clostridium; Firmicutes; Lachnospiraceae; Rikenellaceae; Akkermansia; Barnesiella; Coprobacillus; Coprococcus; Delftia; Dorea; Fusobacterium; Gemmiger; Holdemania; Methanobrevibacter; Neisseria; Paraprevotella; Phascolarctobacterium; Roseburia; Ruminococcus; Saccharibacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Dysbiosis Of Bile Acid Homeostasis (Increase),Akkermansia muciniphila; Clostridiales; Erysipelotrichaceae allobaculum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Dysentery (decrease),Bifidobacterium bifidum; Blautia hansenii; Catenibacterium; Coprococcus; Eubacterium; Liothrips reuteri; Oscillospiraceae; Roseburia; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Dysentery (increase),Actinomyces; Enterococcus; Fusobacterium; Fusobacterium mortiferum; Gemella; Megamonas; Sutterella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Dyslipidemia (decrease),Lactobacillus rhamnosus GG,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Dyspepsia (decrease),Bacteroidetes; Clostridium IV; Clostridium Xiva; Bifidobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Dyspepsia (Increase),Cyanobacteria; Firmicutes; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Eczema (decrease),Bifidobacterium sp.; Clostridium; Acidaminococcus; Allisonella; Anaeroglobus; Anaerotruncus; Bacteroides fragilis; Bifidobacterium; Bifidobacterium bifidum; Bifidobacterium longum; Brachybacterium; Brevibacterium; Butyricicoccus; Clostridium sensu stricto; Clostridium XI; Collinsella; Corynebacterium; Dialister; Dorea; Eikenella; Erysipelotrichaceae incertae sedis; Granulicatella; Haemophilus; Holdemanella biformis; Klebsiella; Lactobacillus; Megasphaera; Oscillibacter; Prevotella; Ruminococcus; Ruminococcus2; Streptococcus; Streptococcus salivarius; Sutterella; Turicibacter; Anaerostipes; Eubacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Eczema (Increase),Clostridium; Escherichia; Faecalibacterium; Faecalibacterium prausnitzii; Lachnospiraceae incertae sedis; Ruminococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Eczema (increase),Akkermansia; Akkermansia muciniphila; Anaerostipes; Bacteroides clarus; Bacteroides plebeius CAG:211; Bilophila; Clostridium XlVa; Clostridium XlVb; Coprococcus; Cronobacter; Desulfovibrio; Enterobacter; Escherichia/Shigella sp.; Faecalibacterium; Faecalibacterium prausnitzii; Flavonifractor; Gemmiger; Gemmiger formicilis; Lachnospiraceae incertae sedis; Paenibacillus; Parabacteroides; Parabacteroides merdae; Paraprevotella; Phascolarctobacterium; Porphyromonas; Prevotella buccae; Rhizobium; Roseburia; Ruminococcus gnavus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
End-stage liver disease (decrease),Akkermansia; Desulfo bacterales; Eubacteriaceae; Micromonosporaceae; Campylobacter; Dorea; Lactobacillus; Paraprevotella; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
End-stage liver disease (Increase),Actinobacillus; Escherichia; Shigella; Anaerotruncus; Haemophilus; Ruminococcus; Selenomonas; Turicibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Endocarditis (Increase),Corynebacterium amycolatum SK46; Finegoldia magna ATCC 29328; Neisseria flava NJ9703; Streptococcus gallolyticus TX20005; Rothia dentocariosa ATCC 17931; Rothia dentocariosa M567; Rothia mucilaginosa ATCC 25296; Rothia mucilaginosa M508; Porphyromonas endodontalis ATCC 35406; Streptococcus sanguinis SK1; Streptococcus sanguinis SK49; Streptococcus sanguinis SK72; Streptococcus sanguinis SK115; Streptococcus sanguinis SK150; Streptococcus sanguinis SK160; Streptococcus sanguinis SK330; Streptococcus sanguinis SK340; Streptococcus sanguinis SK353; Streptococcus sanguinis SK355; Streptococcus sanguinis SK405; Streptococcus sanguinis SK408; Streptococcus sanguinis SK678; Streptococcus sanguinis SK1056; Streptococcus sanguinis SK1057; Streptococcus sanguinis SK1058; Streptococcus sanguinis SK1059; Streptococcus sanguinis SK1087; Streptococcus sanguinis VMC66; Enterococcus faecalis HH22; Enterococcus faecalis TX0104; Enterococcus faecium DO; Enterococcus faecalis S613; Enterococcus faecalis R712,PubMed,1.6 - Disease Signature,Strain,NA,NA,C14.280.282,NA,Whole Genome Sequencing,Increase
Enterocolitis (Increase),Bacillus fragilis; Ruminococcaceae; Bacteroides; Prevotella; Microbiota form conventionally raised mice; Escherichia coli; Bacteroidetes; Firmicutes; Tenericutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Enterocolitis and Constipation (Increase),Bacteroidetes; Porphyromonas; Allobaculum; Bifidobacterium; Lactobacillus; Oscillospira; Ruminococcaceae; Turicibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Enterocolitis, Pseudomembranous (decrease)",Actinobacteria; Akkermansia; Alloprevotella; Bacteroidetes; Erysipelotrichaceae uncultured; Muribaculaceae; Prevotellaceae UCG-001; Proteobacteria; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
"Enterocolitis, Pseudomembranous (increase)",Alistipes; Bacteroides; Deferribacteres; Desulfovibrio; Firmicutes; Helicobacter; Lachnospiraceae NK4A136; Odoribacter; Parabacteroides; Paraprevotella; Parasutterella; Spirochaetae; Tenericutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Enterocolitis,Necrotizing (decrease)",Actinobacteria; Bacteroidetes; Firmicutes; Enterobacteriaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Enterocolitis; Hirschsprung Disease (decrease),Bacteroidetes; Bacteroides; Bacteroides fragilis; Faecalibacterium prausnitzii,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Enterocolitis; Hirschsprung Disease (increase),Proteobacteria; Veillonella dispar; Veillonella parvula; Escherichia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Erectile Dysfunction and Diabetes Mellitus (decrease),Allobaculum; Anaerotruncus; Bifidobacterium; Eubacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Erectile Dysfunction and Diabetes Mellitus (Increase),Aerococcus; Corynebacterium; Enterococcus; Facklamia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Fatigue (increase),Brevundimonas diminuta; Coprobacillus; Desulfovibrionales; Erysipelotrichaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
"Fatigue Syndrome, Chronic (decrease)",Collinsella aerofaciens; Coprococcus sp.; Eggerthella lenta; Faecalibacterium prausnitzii; Oscillospira sp.; Ruminococcus sp.,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Fatty Liver (decrease),Actinobacteria; Actinomyces; Collinsella; Gemella; Gordonibacter; Streptococcus; Sutterella; Thalassospira; Bacteroides; Desulfovibrionaceae; Oscillospira; Staphylococcaceae; Firmicutes; Bacteroidetes; Christensenellaceae; Lactobacillus; Odoribacter; Oscillibacter; Prevotellaceae; Microbiota form conventionally raised mice; Akkermansia; Peptostreptococcaceae; Clostridium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Fatty Liver (Increase),Cyanobacteria; Alistipes; Alloprevotella; Anaerofilum; Elusimicrobia; Elusimicrobium; Papillibacter; Quinella; Ruminococcus; Spirochaetae; Tenericutes; Treponema; Bacteroides; Parabacteroides; Bacteroidetes; Lactobacillus; Microbiota form conventionally raised mice; Alcaligenaceae; Sutterella; Firmicutes; Proteobacteria; Actinobacteria; Microbiota form conventionally raised Sprague Dawley rats; Clostridiaceae; Clostridiales; Deferribacteraceae; Desulfovibrionaceae; Erysipelotrichaceae; Helicobacteraceae; Lachnospiraceae; Akkermansia; Oscillospira; Peptostreptococcaceae; Lactobacillus mali Aps1; Blautia coccoides; Akkermansia muciniphila; Enterobacteriaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Fatty Liver and Obesity (Increase),Akkermansia; Bacteroidetes; Lachnospiraceae; Oscillospira; Parabacteroides; Ruminococcus; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Fibromyalgia (decrease),Faecalibacterium prausnitzii; Bacteroides uniformis; Prevotella copri; Blautia faecis,PubMed,1.6 - Disease Signature,Species,NA,NA,C05.651.324; C05.799.321; C10.668.491.425,NA,16S rRNA and Shotgun Sequencing,Decrease
Fibromyalgia (Increase),Rothia mucilaginosa; Streptococcus parasanguinis; Streptococcus salivarius; Streptococcus vestibularis,PubMed,1.6 - Disease Signature,Species,NA,NA,C05.651.324; C05.799.321; C10.668.491.425,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Food Allergies (decrease),Megasphaera; Ruminococcaceae; Flavobacteriaceae; Phyllobacteriaceae; Mesorhizobium; Achromobacter; Alcaligenaceae; Eggerthella; Flavobacteria; Xanthomonadaceae; Stenotrophomonas; Mogibacterium; Chryseobacterium; Comamonas,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C20.543.480.370,615508,"16S rRNA - V1-V3 regions, Roche 454 platform",Decrease
Food Allergies (increase),Cytophagaceae; Nocardiaceae; Rodococcus; Corynebacterineae; Butyricicoccus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C20.543.480.370,615508,"16S rRNA - V1-V3 regions, Roche 454 platform",Increase
Gastroenteritis (Increase),"Edwardsiella tarda ATCC 23685; Campylobacterli JV20; Helicobacternadensis MIT 98-5491, ATCC 700968; Helicobacter pullorum MIT 98-5489; Providencia alcalifaciens. 019:H2 DSM 30120; Providencia rettgeri DSM 1131; Campylobacter upsaliensis JV21; Arcobacter butzleri JV22",PubMed,1.6 - Disease Signature,Strain,NA,NA,C06.405.205,NA,Whole Genome Sequencing,Increase
Gastrointestinal Diseases (decrease),Faecalibacterium; Granulicatella; Ruminococcaceae; Ruminococcus; Streptococcus; Microbiota form homo sapiens,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Gingivitis (Increase),Actinomycesaevenitzii C83; Actinomyces viscosus C505; Peptostreptococcus stomatis DSM 17678,PubMed,1.6 - Disease Signature,Strain,NA,NA,C07.465.714.258.480,NA,Whole Genome Sequencing,Increase
Graft Vs Host Disease (Increase),Akkermansia; Bacteroidales; Bifidobacteriales; Clostridiales; Coriobacteriales; Lactobacillales; Streptococcus; Enterobacter hormaechei�subsp.�steigerwaltii,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Granulocytes (Increase),Lactococcus lactis; Eubacterium eligens; Eubacterium ventriosum; Coprococcus catus; Anaerotruncus unclassified,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Hashimoto Disease (decrease),Eubacterium; Fusicatenibacter; Lachnoclostridium; Ruminococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hashimoto Disease (decrease),Bifidobacterium; Dialister; Lactobacillus; Veillonellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Hashimoto Disease (Increase),Bacteroides; Blautia; Dorea; Faecalibacterium; Prevotella 9; Romboutsia; Roseburia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
HDL (Increase),Bacteroides cellulosilyticus; Parabacteroides merdae; Alistipesahii; Coprococcus catus; Coprococcus eutactus; Subdoligranulum unclassified,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Head and neck squamous cell carcinoma (decrease),Lautropia; Oribacterium; Granulicatella; Prevotella; Leptotrichia; Gemellaceae; Aggregatibacter; Neisseria; Haemophilus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,"C04.557.470.200.400, C04.557.470.700.400",275355,"16S rRNA - V3-V5 regions, Roche 454 FLX",Decrease
Head and neck squamous cell carcinoma (increase),Streptococcus; Lactobacillus; Staphylococcus; Parvimonas,PubMed,1.6 - Disease Signature,Genus,NA,NA,"C04.557.470.200.400, C04.557.470.700.400",275355,"16S rRNA - V3-V5 regions, Roche 454 FLX",Increase
Heart Failure (decrease),Clostridium clostridioforme; Faecalibacterium; Faecalibacterium prausnitzii; Bifidobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Heart Failure (Increase),Lactobacillus; Lactobacillus salivarius; SMB53; Streptococcus; Veillonella; Megamonas,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hepatic Encephalopathy (decrease),Clostridium; Streptococcus; Veillonella; Microbiota form patients with minimal HE; Clostridium_incertae_sedis; Lactobacillus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hepatic Encephalopathy (Increase),Bacteroides; Clostridium XI; Fusobacterium; Phascolarctobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hepatitis (decrease),Erysipelotrichaceae; Clostridiales; Erysipelotrichales; Firmicutes; Lactobacillales; Enterobacter; Lachnospiraceae incertae sedis; Lactobacillus; Gut microbiota producing indole via metabolism; Desulfovibrionaceae; Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hepatitis (Increase),Bacteroidetes; Odoribacter; Parabacteroides; Microbiota form conventionally raised aged mice; Rikenellaceae; Vadin BB60 group; Desulfovibrionaceae; Lachnospiraceae; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hepatitis B (decrease),Bacteroides; Asaccharobacter; Coriobacteriaceae; Escherichia; Shigella; Butyricimonas; Parabacteroides; Alistipes; Clostridium IV; Ruminococcus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C02.256.430.400.100; C02.440.435.100; C06.552.380.350.100; C06.552.380.705.437.100,610424,"16S rRNA - V3-V4 regions, Illumina MiSeq",Decrease
Hepatitis B virus related decompensated Cirrhosis (decrease),Lacticaseibacillus rhamnosus; Lactobacillus acidophilus; Limosilactobacillus fermentum; Limosilactobacillus reuteri,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hepatolenticular Degeneration (decrease),Megamonas; Phascolarctobacterium; Proteobacteria; Roseburia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hepatolenticular Degeneration (Increase),Bacteroidetes; Faecalibacterium; Firmicutes; Fusobacteria; Lachnospira; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hiprculation (Increase),Alistipes finegoldii; Alistipes onderdonkii; Streptococcus thermophilus; Subdoligranulum unclassified; Alistipes shahii; Dorea formicigenerans,PubMed,1.1 - Anthropometric,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
HIV infection (decrease),Adlercreutzia; Anaerococcus; Finegoldia; Sneathia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
HIV Infections (decrease),Bacteroides; Bacteroidetes; Faecalibacterium; Lachnospira; Parabacteroides; Phascolarctobacterium; Roseburia; Sutterella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
HIV-1 Infection (decrease),Bacteroides uniformis; Bacteroides xylanisolvens; Alistipes putredinis; Parabacteriodes distasonis; Bacteroides thetaiotaomicron; Bacteroides finegoldii; Bacteroides massiliensis,PubMed,1.6 - Disease Signature,Species,NA,NA,C02.782.815.616.400; C02.800.801.400; C20.673.480,NA,"16S rRNA - V4 region, Illumina MiSeq",Decrease
HIV-1 Infection (increase),Prevotella stercorea; Prevotella copri; Catenibacterium mitsuokai; Eubacterium biforme; Dialister propionicifaciens; Desulfovibrio piger; Mituokella jalaludinii; Allisonella histaminiformans; Ruminococcus callidus; Megasphaera elsdenii,PubMed,1.6 - Disease Signature,Species,NA,NA,C02.782.815.616.400; C02.800.801.400; C20.673.480,NA,"16S rRNA - V4 region, Illumina MiSeq",Increase
HIV-1 infection in Mozambique (decrease),Akkermansia; Anaerovibrio; Bifidobacterium; Clostridium,PubMed,1.6 - Disease Signature,Genus,NA,NA,C02.782.815.616.400; C02.800.801.400; C20.673.480,NA,"16S rRNA � V3-V4 regions, Illumina MiSeq",Decrease
HPV (decrease),Mycoplasma; Aggregatibacter; Capnocytophaga; Leptotrichia; Neisseria; Eikenella,PubMed,1.6 - Disease Signature,Genus,NA,NA,C02.256.650; C02.928.72,NA,"16S rRNA - V3-V5 regions, Roche 454 FLX",Decrease
HPV (decreased),Pseudoxanthomonas; Actinomyces; Vampirovibrio; GpXIII; Alkanindiges,PubMed,1.6 - Disease Signature,Genus,NA,NA,C02.256.650; C02.928.72,NA,"16S rRNA - V3-V5 regions, Roche 454 FLX+",Decrease
HPV (increased),Sneathia; Megashpaera; Pediococcus; Brevibacterium; Pseudomonas,PubMed,1.6 - Disease Signature,Genus,NA,NA,C02.256.650; C02.928.72,NA,"16S rRNA - V3-V5 regions, Roche 454 FLX+",Increase
Hyperlipidemias (decrease),Fusobacteria; Succinivibrio; Barnesiella; Helicobacter; Lactobacillus; Bacteroides; Prevotella; Butyricimonas; Helicobacteraceae; Odoribacteraceae; Peptococcaceae; Pseudomonadaceae; RFP12,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Hyperlipidemias (Increase),Bacteroidetes; Proteobacteria; Antibiotic-altered gut microbiota; Akkermansia; Blautia; Clostridium; Escherichia; Parabacteroides; Sutterella; RF16; Rikenellaceae; Veillonelaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hyperphosphatemia (Increase),Centipeda; Chryseobacterium; Curvibacter; Gemella; Parvimonas; Pelomonas; Rhodocyclaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hypertension (decrease),Akkermansia; Faecalibacterium; Lactobacillus; Roseburia; Ruminococcaceae; Aggregatibacter; Arthrobacter; Bacteroides; Blautia; Brachybacterim; Cellulomonas; Clostridium; Corynebacterium; Dehalobacterium; Exiguobacterium; Frigoribacterium; Kingella; Mycoplasma; Neisseria; Oribacterium; Prosthecobacter; Rothia; Sphingobium; Sporosarcina; Streptococcus; Yaniella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hypertension (Increase),Lachnospiraceae; Adlercreutzia; Aeromicrobium; Akkermansia; Anaerofustis; Arcobacter; Bifidobacterium; Bilophila; Brevibacterium; Buchnera; Dorea; Facklamia; Faecalibacterium; Fusobacteria; Granulicatella; Jeotgalicoccus; Lactobacillus; Lactococcus; Methylibim; Microbispora; Modestobacter; Odoribacter; Parabacteroides; Paraprevotella; Peptoniphilus; Pseudomonas; Rathayibacter; RC4-4; Rhodococcus; Rikenella; Ruminococcus; Selenomonas; Sphingomonadaceae; Staphylocos; Steroidobacter; Sutterella; Tannerella forsythia; Veillonella; Weissella; Xylanimicrobium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hyperuricemia (decrease),Allobaculum; Alloprevotella; Bacteroides; Phascolarctobacterium; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hyperuricemia (Increase),Anaerovibrio; Barnesiella; Blautia; Catabacter; Clostridium_XlVa; Clostridium_XVIII; Flavonifractor; Olsenella; Parabacteroides; Prevotella; Robinsoniella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Hypoxia (decrease),Bifidobacterium; Intestinimonas; Lachnospiraceae UCG005; Ruminiclostridium 5; Butyricimonas; Coriobacteriaceae UCG002; Lachnoclostridium 10; Methanobrevibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Hypoxia (Increase),Anaerotruncus; Blautia; Butyricimonas; Coprococcus 2; Coriobacteriaceae UCG002; Flavonifractor; Lachnoclostridium 10; Methanobrevibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
IBS (Increase),Eggerthella lenta; Eggerthella unclassified; Bacteroides caccae; Paraprevotella unclassified; Alistipes shahii; Dorea longicatena,PubMed,1.6 - Disease Signature,Species,NA,NA,C06,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Increase Susceptibility to Malaria (decrease),Fervidicella; Anaeroplasma; Vagococcus; Lachnospiracea; Roseburia; Clostridium; Turicibacter; Anaerotruncus; Allobaculum; Lactobacillus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C03.752.530,611162,"16S rRNA - V4 region, Illumina MiSeq",Decrease
Increase Susceptibility to Malaria (increase),Barnesiella; Bacteroides; Odoribacter; Prevotella; Desulfovibrio; Desulfohalobium; Papillibacter,PubMed,1.6 - Disease Signature,Genus,NA,NA,C03.752.530,611162,"16S rRNA - V4 region, Illumina MiSeq",Increase
Infantile Cholestasis (decrease),Bacteroides; Bifidobacterium; Enterococcus; Phyllobacterium; Rothia; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Infantile Cholestasis (Increase),Anaerostipes; Blautia; Faecalibacterium; Ruminococcus; Staphylococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Inferior Wall�Myocardial Infarction (Increase),Dethiosulfovibrionaceae; Eubacteriaceae; Lachnospiraceae; Spirochaetes; Synergistetes; Syntrophomonadaceae; Tissierella soehngenia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Inflammation (decrease),Clostridiales; Lachnospiraceae; Ruminococcaceae; Lactobacillus; Escherichia Coli; Fusobacterium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Inflammation (Increase),Bacteroidaceae; Bifidobacteriaceae; Lactobacillaceae; Paraprevotellaceae; Sphingomonadaceae; Bacteroidetes; Prevotellaceae; Clostridium perfringens; Leuconostocaceae; Faecalibacterium prausnitzii,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Inflammatory Bowel Diseases (decrease),Bacteroides; Lactobacillus; Lachnospiraceae; Ruminococcaceae; Firmicutes; Bacteroides vulgatus; Christensenella minuta; Clostridium scindens; Faecalibacterium prausnitzii; Lachnospiraceae bacterium; Escherichia; Marvinbryantia; Oscillibacter; Peptococcus; Roseburia; Staphylococcaceae; Stenotrophomonas; Citrobacter rodentium; Clostridium; Eubacterium; Heligmosomoides polygyrus; Verrucomicrobia; Enterobacteriaceae; Rikenellaceae; Blautia; Turicibacter; Akkermansia; Allobaculum; Anaeroplasma; Akkermansia muciniphila; Bacteroidetes; Proteobacteria; Microbiota form exercise-trained mice mice; Bacteroidaceae; Coprococcus; Dehalobacterium; Dorea; Prevotella; Ruminococcus; Peptostreptococcaceae; Alistipes putredinis; Blautia obeum; Bacteroides acidifaciens; Mogibacterium neglectum; Streptococcous thermophilus; Christensenellaceae; Mogibacteriaceae; Paraprevotellaceae; Prevotellaceae; Microbiota form conventionally raised mice; Bifidobacterium; Pseudoflavonifractor; Coriobacteriaceae; RF32; Lachnoclostridium; Clostridium coccoides; Escherichia coli; Saccharomyces boulardii; Saccharomyces; Butyrate producing bacteria; Coprococcus 1; Ruminiclostridium 9; Ruminococcaceae Ucg-014; Erysipelotrichaceae; Faecalibacterium; Odoribacter; Olsenella�congonensis; Negativicutes; Moraxellaceae; Betaproteobacteria; Methylobacteriaceae; Sphingomonadaceae; Bacteroides�plebeius; Bacteroides�uniformis; Deltaproteobacteria; Alistipes; Lachnospiraceae NK4A136; Oxalophagus; Prevotellaceae UCG-001; Pseudomonas; Schizosaccharomyces; Shigella; Silanimonas; Thermus; Ruminococcus torques; Bifidobacterium Adolescentis; Bifidobacterium longum; Helicobacter; Lactobacillus salivarius; Clostridium cluster IV; Clostridium subcluster XIVa; Clostridiales; Enterococcaceae; Enterococcus; Oscillospira; Escherichia coli Nissle 1917; Actinobacteria; Bacteroides thetaiotaomicron; Enterococcus faecalis; Methanobrevibacter; Butyric acid producing bacteria; Clostridiaceae; Staphylococcus epidermidis; Lactobacillus helveticus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Inflammatory Bowel Diseases (Increase),Microbiota form mice (C57BL/6 or ApoE-deficient [ApoE-KO] mice); Lachnospiraceae; Streptococcaceae; Lactobacillaceae; Prevotella; Bacteroidetes; Bifidobacterium choerinum; Lactobacillus gasseri; Allobaculum; Candidatus arthromitus; Enterorhabdus; Lactobacillus; Streptococcus; Turicibacter; Bacteroides; Citrobacter rodentium; Clostridium; Eubacterium; Heligmosomoides polygyrus; Proteobacteria; Ruminococcaceae; Microbiota form Tibetan pig lines; Microbiota form Yorkshire pig lines; Firmicutes; Verrucomicrobia; Bacteroidales S24-7 group; Helicobacter hepaticus; Bacteroidaceae; Actinobacteria; Segmented filamentous bacteria; Enterobacteriaceae; Deferribacteres; Mucispirillum; Parabacteroides; Helicobacter muridarum; Rikenellaceae; Helicobacteraceae; Sutterella; Trabulsiella; Enterococcus; Adlercreutzia; Anaerostipes; Coriobacteria; Ruminococcus; Ruminococcus gnavus; Streptococcus parasanguinis; Streptococcus salivarius; Akkermansia muciniphila; Escherichia coli; Bifidobacterium; Disulfovibrio; Bacillus licheniformis; Helicobacter; Lactococcus; Acetivibrio cellulosolvens; Clostridium populeti; Desulfomicrobium orale; Desulfovibrio piger; Mucispirillum schaedleri; Odoribacter laneus; Desulfovibrionaceae; Peptococcaceae; Porphyromonadaceae; S24-7; Actinobacterium; Faecalibacterium prausnitzii; Bilophila wadsworthia; Eubacterium plexicaudatum; Lactobacillus murinus; Parabacteroides goldsteinii; Af12; Akkermansia; Gammaproteobacteria; Bacillus; Roseburia; Ruminiclostridium; Microbiota form conventionally raised mice; Clostridium leptum; Alloprevotella; Desulfovibrio; Barnesiella; Allobaculum�stercoricanis; Dorea�formicigenerans; Acidaminococcus; Veillonella; Blautia; Lachnospira; Oligella; Fusobacterium; Peptostreptococcus; Staphylococcaceae; Bacillus amyloliquefaciens; Clostridium perfringens; Lactobacillus rhamnosus strain GG; Bacteroidia; Roseburia inulinivorans; Solitalea�cAnadensis; Verrucomicrobiae; Acidobacteria; Azospirillum; Halomonas; Paracoccus; Betaproteobacteria; Coprococcus�catus; Microbiota form dogs; Clostridium difficile; F16; Lactobacillales; Unclassified Christensenellaceae; Unclassified SHA-98; Lactobacillus acidophilus; Enterococcaceae; Enterococci; Odoribacter; Lactobacillus johnsonii; Bilophila; Enterococcus faecalis,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Insulin Resistance (decrease),Paraprevotella; Prevotella; Actinobacillus; Fusobacteria; Gammaproteobacteria; Lactobacillales; Ruminococcus; Bacteroides; Lachnospira; Akkermansia; Bifidobacterium; Butyricimonas; Desulfovibrio; Anaerostipes; Clostridium; Enterococcus; Firmicutes; Porphyromonas,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Insulin Resistance (Increase),Mucispirillum; Neisseria; Odoribacter; Streptococcus; Bifidobacterium; Lactobacillus; Aggregatibacter; Dorea; Parabacteroides; Rikenella; Roseburia; Ruminococcus; Sutterella; Escherichia coli; Bacteroidaceae; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Insulin Resistance and Fatty Liver (decrease),Anaerostipes; Barnesiella; Bifidobacterium; Clostridium; Turicibacter; Akkermansia muciniphila; Lactobacillus; Oscillibacter; Peptostreptococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Insulin Resistance and Fatty Liver (Increase),Anaerotruncus; Clostridiaceae; Clostridiales; Oscillibacter; Oscillospira; Peptostreptococcaceae; Akkermansia muciniphila,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Intestinal Diseases (Negative correlation due to TAI treatment),Bacteroidia; Betaproteobacteria; Coriobacteria; Phycisphaerae; Planctomycetia; Sphingobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Negative correlation due to TAI treatment
Intestinal Diseases and Fatty Liver (decrease),Bacteroidetes; Bifidobacteria; Firmicutes; Lactobacillus; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Intestinal Polyposis (Increase),Bifidobacterium; Enterococcus faecalis; Lactobacillus; Roseburia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Intoxication (Increase),Lactobacillus with bile salt hydrolase (BSH) activity,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Irritable Bowel Syndrome (decrease),Firmicutes; Ruminococcaceae; Lactobacillus acidophilus; Lactobacillus plantarum; Lactobacillus reuteri; Lactobacillus rhamnosus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Keratoconjunctivitis; Infectious (decrease),Acidaminococcus; Phocaeicola plebeius; Bifidobacterium adolescentis; Clostridium; Dialister; Faecalibacterium prausnitzii; Lachnospira; Megasphaera; Mitsuokella multacida; Roseburia; Roseburia faecis; Ruminococcus; Sutterella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Kidney Calculi (decrease),Anaerobutyricum hallii; Anaerostipes; Bilophila; Dialister; Dorea; Eubacterium ruminantium; Fusicatenibacter; Holdemania; Parasutterella; Ruminococcus; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Kidney Calculi (increase),Phascolarctobacterium; Acinetobacter; Alloprevotella; Erysipelatoclostridium; Escherichia/Shigella sp.; Megamonas; Sutterella; unclassified Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Leucocytes (Increase),Eubacterium eligens; Eubacterium ventriosum; Coprococcus catus; Coprococcus ART55 1; Anaerotruncus unclassified; Subdoligranulum unclassified,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Lipid Metabolism Disorders (decrease),Allobaculum; Clostridium; Firmicutes; Bacteroidetes; Alloprevotella; Ruminococcus 1; Turicibacter�sanguinis,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Lipid Metabolism Disorders (Increase),Ruminococcus; Bacteroidetes; Firmicutes; Verrucomicrobia; Blautia; Clostridium; Coprococcus; Phascolarctobacterium; Romboutsia; Turicibacter; Alistipes; Lachnospira�multipara; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Liver Abscess, Pyogenic (decrease)",Actinobacteria; Candidatus Saccharibacteria; Eggerthellaceae; Eggerthellales; Lactobacillaceae; Lactobacillales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
"Liver Cirrhosis (China, decrease)",Alistipes; Alistipes finegoldii; Alistipes putredinis; Bacteroides; Bacteroides eggerthii; Bacteroides finegoldii; Bacteroides. D20; Bacteroides uniformis; Bacteroidetes; Bilophila; Bilophila wadsworthia; Clostridium; Coprococcus; Dorea; Eubacterium; Eubacterium eligens; Eubacterium hallii; Eubacterium rectale; Faecalibacterium; Faecalibacterium prausnitzii; Fusobacteria; Fusobacterium; Haemophilus; Haemophilus parainfluenzae; Holdemania; Lactobacillus; Lactobacillus salivarius; Megasphaera; Odoribacter; Odoribacter splanchnicus; Parabacteroides; Parabacteroides distasonis; Parabacteroides merdae; Phascolarctobacterium; Prevotella; Proteobacteria; Roseburia; Roseburia hominis; Roseburia intestinalis; Ruminococcus; Ruminococcus gnavus; Streptococcus; Streptococcus anginosus; Streptococcus parasanguinis; Streptococcus salivarius; Streptococcus vestibularis; Subdoligranulum; Tannerella; Veillonella; Veillonella atypica; Veillonella dispar; Veillonella parvula,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.552.630,NA,"16S rRNA - V3 region, Roche 454 platform",Decrease
"Liver Cirrhosis (China, increase)",Bacilli; Bacteroidaceae; Bacteroidetes; Enterobacteriaceae; Enterococcus faecalis; Fusobacteria; Fusobacteriaceae; Lachnospira; Lachnospiraceae; Pasteurellaceae; Proteobacteria; Streptococcaceae; Veillonellaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C06.552.630,NA,"16S rRNA - V3 region, Roche 454 platform",Increase
Liver cirrhosis (China) (Increase),Aggregatibacter segnis ATCC 33393; Bifidobacterium dentium JCVIHMP022; Campylobacter sp. 10_1_50; Clostridium perfringens F262; Clostridium symbiosum WAL-14673; Fusobacterium nucleatum subsp. animalis F0419; Haemophilus parainfluenzae T3T1; Lactobacillus fermentum ATCC 14931; Lactobacillus mucosae LM1; Lactobacillus salivarius CECT 5713; Megasphaera micronuciformis F0359; Prevotella buccae ATCC 33574; Ruminococcus gnavus ATCC 29149; Streptococcus anginosus SK52 = DSM 20563; Streptococcus oralis SK313; Streptococcus parasanguinis ATCC 903; Streptococcus salivarius JIM8777; Streptococcus sp. 2_1_36FAA; Streptococcus vestibularis F0396; Veillonella atypica ACS-134-V-Col7a; Veillonella dispar ATCC 17748; Veillonella parvula ATCC 17745; Veillonella sp. oral taxon 158 str. F0412,PubMed,1.6 - Disease Signature,Strain,NA,NA,C06.552.630,215600,16S rRNA - Illumina MiSeq,Increase
Liver Cirrhosis (decrease),Desulfotomaculum; Eubacterium; Lactobacillus; Alistipes putredinis; Clostridiales; Peptostroptococcaceae; Roseburia faecis; Ruminococcaceae; Acidobacteria; Bacteroides; Lachnospiraceae; Ruminococcus; Proteobacteria; Acetivibrio; Bilophila; Clostridium; Flavonifractor; Megasphaera; Mitsuokella; Pseudoflavonifractor; Vampirovibrio; Cyanobacteria; Elusimicrobia; Lentisphaerae; Spirochaetes; Tenericutes; Neisseriaceae; Clostridium butyricum; Anaerostipes; Barnesiellaceae; Butyricicoccus; Dorea; Granulicatella; Bacteroidaceae; Blautia; Sellimonas; Alistipes; Odoribacter; Elusimicrobium; Lactobacillus salivarius Li01,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Liver Cirrhosis (Increase),Veillonella; Enterobacteriaceae; Lactobacillaceae; Porphyromonas; Staphylococcaceae; Actinobacillus; Anaeroglobus geminatus; Enterobacter; Gammaproteobacteria; Haemophilus parainfluenzae; Klebsiella; Megasphaera micronuciformis; Neisseriaceae; Paraprevotella clara; Sphingomonadaceae; Streptococcus; Escherichia coli; Firmicutes; Akkermansia; Alloprevotella; Citrobacter; Escherichia; Haemophilus; Lactobacillus; Micrococcus; Pediococcus; Weissella; Enterococcus; Bifidobacterium; Pasteurellaceae; Bacteroidetes; Faecalibacterium; Streptococcaceae; Veillonellaceae; Intestinibacter; Lachnoclostridium; Lachnospiraceae Ucg-010; Odoribacter; Parabacteroides; Paraprevotella; Eubacterium; Ruminococcus; Pediococcus pentosaceus Li05,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Liver damage (decrease),Helicobacteraceae; Paraprevotellaceae; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Liver damage (Increase),Bacteroidetes; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Liver Diseases (decrease),Enterobacteriaceae; Bacteroides; Deferribacteres,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Liver Diseases (Increase),Dorea; RC4-4; Halomonas; Parabacteroides; S24-7,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Liver Diseases (increase),Atopobium sp.; Bacteroides acidifaciens; Bacteroides sp.; Bacteroides uniformis; Clostridium cocleatum; Clostridium xylanolyticum; Desulfovibrio sp.; Phocaeicola vulgatus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Liver Function (decrease),Acidobacteria; Actinobacteria; Cyanobacteria; Deferribacteres; Fusobacteria; Gemmatimonadetes; Lentisphaerae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Liver Transplantation (Increase),Lactobacillus; Clostridium I; Clostridium XIV; Faecalibacterium prausnitzii,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Liver Transplantation; Hepatitis B Cirrhosis (increase),Lacticaseibacillus paracasei; Ligilactobacillus salivarius; Lacticaseibacillus rhamnosus; Lactobacillus crispatus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,increase
Lung Neoplasms (decrease),Bifidobacterium; Ruminococcus; Streptococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Malodor in children (decrease),Corynebacterium pseudogenitalium; Corynebacterium tuberculostearicum; Malassezia globosa; Acinetobacter schindleri; Cutibacterium granulosum; Cutibacterium acnes,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing � Illumina HiSeq 2000,Decrease
Maternal Antenatal infection (decrease),Plantomycetes; Gemmata; Leifsonia; Haliangium; Actinosynnema; Eubacterium; Selenomonas; Thioalkalivibrio; Propionibacterium,PubMed,1.6 - Disease Signature,Genus,NA,NA,C01,NA,Whole Genome Sequencing - Illumina HiSeq 2500,Decrease
Maternal Antenatal infection (increase),Gloeobacter; Arthrobacter; Klebsiella; Acinetobacter; Streptococcus; Pseudoalteromonas,PubMed,1.6 - Disease Signature,Genus,NA,NA,C01,NA,Whole Genome Sequencing - Illumina HiSeq 2500,Increase
Metabolic Diseases (decrease),Actinobacteria; Coriobacteriia; Faecalibacterium; Bacteroidetes; Proteobacteria; Allobaculum; Clostridia; Erysipelotrichia; Lachnoclostridium; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Metabolic Diseases (Increase),Proteobacteria; Roseburia; Firmicutes; Bacteroidaceae; Clostridiaceae; Rikenellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Metabolic endotoxemia (decrease),Butyricicoccus; Anaeroplasma; Bacteroidetes; Clostridium,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Metabolic Homeostasis (Increase),Akkermansia; Clostridium Xi; Coriobacteriaceae; Dorea; Enterorhabdus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Metabolic Syndrome (decrease ),Bacteroidetes ; Campylobacteraceae ; Christensenellaceae ; Eggerthella ; Oscillospiraceae ; Tenericutes ; Turicibacter ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,decrease
Metabolic Syndrome (decrease ),Bacteroidetes ; Campylobacteraceae ; Christensenellaceae ; Eggerthella ; Oscillospiraceae ; Tenericutes ; Turicibacter ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,decrease
Metabolic Syndrome (decrease),Actinobacteria; Bacillales; Bifidobacterium; Burkholderiales; Archaea; Christencenellacea; Methanobrevibacter; Ruminococcaceae; Roseburia; Akkermansia; Bifidobacteria; Clostridium; Streptococcus; Desulfovibrio; Marispirillum; Mucilaginibacter; Sutterellaceae; Peptococcus; Bacteroides; Lactobacillus; Ruminococcus; Bacteroidetes; Firmicutes; Fusobacterium; Barnesiella; Erysipelotrichaceae; Prevotella; Neisseria; Proteobacteria; Allobaculum; Cyanobacteria; Faecalibacterium prausnitzii,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Metabolic Syndrome (increase ),Erysipelotrichaceae ; Firmicutes ; Lachnospiraceae ; Veillonellaceae ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,increase
Metabolic Syndrome (increase ),Erysipelotrichaceae ; Firmicutes ; Lachnospiraceae ; Veillonellaceae ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,increase
Metabolic Syndrome (Increase),Akkermansia; Bifidobacterium; Lactobacillus; Methanobrevibacter; Odoribacter; Sutterella; Bacteroides fragilis; Betaproteobacteria; Anaerostipes; Bacteroidaceae; Blautia; Collinsella; Coprobacillus; Lachnospiraceae; Oscillospira; Ruminococcaceae; Ruminococcus; Tissierellaceae; Bacteroidetes; Erysipelotrichaceae; Holdemania; Bilophila wadsworthia; Desulfovibrio; Enterococcus; Clostridiaceae; Bifidobacteriaceae; Enterococcaceae; Granulicatella; Coprococcus; Lactobacillus rhamnosus NCIMB 6375; Bacteroides; Escherichia; Fusobacteria; Proteobacteria; Allobaculum; Porphyromonas; Candidatus portiera; Clostridium; Dickeya; SMB53; Succinivibrio; Faecalibacterium; Lachnospira; Caulobacteraceae; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Mild lung disease; Cystic Fibrosis (increase ),Dorea ; Pseudobutyrivibrio ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Mucositis (decrease),Streptococcus; Actinomyces; Gemella; Granulicatella; Veillonella,PubMed,1.6 - Disease Signature,Genus,NA,NA,NA,NA,16S rRNA � V1-V2 regions � 454-GS-FLX,Decrease
Multiple Sclerosis (decrease ),Bacteroidaceae ; Faecalibacterium ; Oscillospiraceae ; Lachnospiraceae ; Anaerostipes ; Butyricimonas ; Methanobrevibacter ; Prevotella ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,decrease
Multiple Sclerosis (decrease ),Bacteroidaceae ; Faecalibacterium ; Oscillospiraceae ; Lachnospiraceae ; Anaerostipes ; Butyricimonas ; Methanobrevibacter ; Prevotella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Multiple Sclerosis (increase ),Ruminococcus ; Actinobacteria ; Bilophila ; Christensenellaceae ; Desulfovibrio ; Akkermansia ; Euryarchaeota ; Verrucomicrobia ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,increase
Multiple Sclerosis (increase ),Ruminococcus ; Actinobacteria ; Bilophila ; Christensenellaceae ; Desulfovibrio ; Akkermansia ; Euryarchaeota ; Verrucomicrobia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Multiple Sclerosis (increase),Psuedomonas; Mycoplana; Haemophilus; Blautia; Dorea,PubMed,1.6 - Disease Signature,Genus,NA,NA,C10.114.375.500; C10.314.350.500; C20.111.258.250.500,"126200; 612595; 612596
","16S rRNA - V3-V5 regions, Roche 454 Titanium",Increase
Myocardial Infarction (increase),Bifidobacterium adolescentis; Bacteroides eggerthii; Clostridium bolteae; Eubacterium eligens; Coprococcus comes; Dorea longicatena,PubMed,1.6 - Disease Signature,Species,NA,NA,C14.280.647.500; C14.907.585.50,608446,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Myocardial Infarction (Increase),Helicobacter; Parabacteroides; Prevotella; Ureaplasma,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Neoplasms (increase ),Adlercreutzia ; Alteromonadaceae ; Armatimonadetes ; Bacteroidetes ; Candidatus Endobugula ; Chlamydia ; Clostridiaceae ; Clostridium ; Congregibacter ; Coriobacteriaceae ; Cyanobacteria ; Echinacea ; Enterobacteriaceae ; Flavobacteriaceae ; Helicobacter ; Helicobacteraceae ; Hyphomonadaceae ; Peptostreptococcaceae ; Phaeobacter ; Planctomycetes ; Proteobacteria ; Pseudomonadaceae ; Pseudomonas ; Rhodobacteraceae ; Saprospiraceae ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,increase
Neoplasms (increase ),Adlercreutzia ; Alteromonadaceae ; Armatimonadetes ; Bacteroidetes ; Candidatus Endobugula ; Chlamydia ; Clostridiaceae ; Clostridium ; Congregibacter ; Coriobacteriaceae ; Cyanobacteria ; Echinacea ; Enterobacteriaceae ; Flavobacteriaceae ; Helicobacter ; Helicobacteraceae ; Hyphomonadaceae ; Peptostreptococcaceae ; Phaeobacter ; Planctomycetes ; Proteobacteria ; Pseudomonadaceae ; Pseudomonas ; Rhodobacteraceae ; Saprospiraceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Nephrolithiasis (decrease),Acinetobacter; Alloprevotella; Erysipelatoclostridium; Lachnospiraceae; Megamonas; Phascolarctobacterium; Pseudomonas aeruginosa; Sutterella; Bacteroidetes; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Nephrolithiasis (Increase),Anaerostipes; Bilophila; Dialister; Dorea; Escherichia coli; Eubacterium hallii; Eubacterium ruminantium; Fusicatenibacter; Holdemania; Parasutterella; Ruminiclostridium; Ruminococcus; Subdoligranulum; Tenericutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Nephrolithiasis; Calcium Oxalate (decrease ),Bacteroides ; Bacteroides uniformis ; Bifidobacterium breve ; Christensenellaceae R-7 group ; Citrobacter koseri ; Enterobacter ; Enterococcus faecalis ; Enterorhabdus ; Family XIII UCG-001 ; Klebsiella variicola Lachnospiraceae ND3007 group ; Lachnospiraceae NK4A136 group ; Oribacterium ; Oribacterium parvum ; Rothia ; Ruminiclostridium 5 ; Ruminococcaceae UCG-003 ; Veillonella ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,decrease
Nephrolithiasis; Calcium Oxalate (decrease ),Bacteroides ; Bacteroides uniformis ; Bifidobacterium breve ; Christensenellaceae R-7 group ; Citrobacter koseri ; Enterobacter ; Enterococcus faecalis ; Enterorhabdus ; Family XIII UCG-001 ; Klebsiella variicola ; Lachnospiraceae ND3007 group ; Lachnospiraceae NK4A136 group ; Oribacterium ; Oribacterium parvum ; Rothia ; Ruminiclostridium 5 ; Ruminococcaceae UCG-003 ; Veillonella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Nephrolithiasis; Calcium Oxalate (increase ),Acidaminococcus ; Acidaminococcus intestini ; Cellulosimicrobium cellulans ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Neuroblastoma (absent ),Bacilli ; Clostridia ; Dehalobacterium ; Erysipelotrichia ; Ruminococcus ,PubMed,1.6 - Disease Signature,genus,NA,NA,,NA,NA,absent
Neuroblastoma (absent ),Bacilli ; Clostridia ; Dehalobacterium ; Erysipelotrichia ; Ruminococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,absent
Non-alcoholic Fatty Liver Disease (decrease ),Allobaculum ; Bacteroides ; Bacteroidetes ; Prevotella ; Akkermansia muciniphila ; Bacteroides fragilis ; Blautia ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,decrease
Non-alcoholic Fatty Liver Disease (decrease ),Allobaculum ; Bacteroides ; Bacteroidetes ; Prevotella ; Akkermansia muciniphila ; Bacteroides fragilis ; Blautia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Non-Alcoholic Fatty Liver Disease (decrease),Proteobacteria; Clostridiales; Lachnospira; Ruminococcaceae; Akkermansia muciniphila; Bifidobacteria; Bifidobacterium pseudocatenulatum; Bifidobacterium ruminantium; Lactobacillus helveticus; Lactobacillus sakei; Prevotella; Akkermansia; Streptococcus; Bacteroidetes; Bacteroides; Ruminococcus; Verrucomicrobia; Lactobacillus zeae; Lactobacillaceae; Peptostreptococcaceae; Clostridium ?; Helicobacter; Desulfovibrio; Clostridia; Allobaculum; Erysipelotrichaceae; Firmicutes; Helicobacteraceae; Parabacteroides; Erysipelotrichi; Lactobacillus; Acidobacteria; Blautia; Chlamydia; Chlamydiales; Cyanobacteria; Rubrobacteria; Shewanella; Alloprevotella; Oscillibacter�ruminantium; Streptomyces; Alistipes; Bifidobacterium; Faecalibacterium; Holdemanella; Deltaproteobacteria; Pseudomonas; Clostridium; Porphyromonas; Mucispirillum schaedleri; Actinomycetaceae; Lachnospiraceae; Ruminococcaceae Ucg-014; TMAO-producing microbiota; Enterococcus; Helicobacter pylori; Microbiota form wild-type and RELMB-KO mice; Oscillibacter; Prevotellaceae; Deferribacteres; Tenericutes; Clostridium leptum; Leuconostoc; Christensenellaceae uncultured; Enterorhabdus; Parasutterella; Rikenella; Ruminococcaceae incertae sedis; Coriobacteriaceae; Helicobacteriaceae; Peptococcaceae; Mucispirillum; Roseburia; Bilophila; Dehalobacteriaceae; Lactobacillus reuteri; Gut microbiota in methionine-choline deficient (MCD) diet induced naSH; Clostridium Iv,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Non-alcoholic Fatty Liver Disease (increase ), Escherichia ; Firmicutes ; Roseburia ; Enterobacteriaceae ; Escherichia/Shigella sp. ; Lachnospiraceae ; Phascolarctobacterium ; Blautia ; Clostridium ; Coprococcus ; Dorea ; Mitsuokella ; Odoribacter Peptococcaceae ; Peptococcus ; Porphyromonas ; Proteus ; Slackia ; Succinivibrio ,PubMed,1.6 - Disease Signature,mixed,NA,NA,,NA,NA,increase
Non-alcoholic Fatty Liver Disease (increase ),Blautia ; Coprococcus ; Escherichia ; Firmicutes ; Roseburia ; Enterobacteriaceae ; Escherichia/Shigella sp. ; Lachnospiraceae ; Phascolarctobacterium ; Clostridium ; Dorea ; Mitsuokella ; Odoribacter ; Peptococcaceae ; Peptococcus ; Porphyromonas ; Proteus ; Slackia ; Succinivibrio ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Non-Alcoholic Fatty Liver Disease (Increase),Actinobacteria; Akkermansia; Verrucomicrobia; Blautia; Butyricicoccus; Bifidobacteriaceae infantis; Enterobacteriaceae; Lactobacillus reuteri; Bacteroidetes; Erysipelotrichaceae; Escherichia; Fusobacteria; Lachnospiraceae; Proteobacteria; Streptococcus; Bifidobacterium; Leuconostoc; Firmicutes; Acinetobacter baumannii; Acinetobacter iwofii; Enterococcus faecalis; Klebsiella pneumonia; Pseudomonas aeruginosa; Mucispirillum; Ruminococcus gnavus; Clostridium; Veillonella; Bifidobacterium longum; Lactobacillus brevis; Lactobacillus mucosae; Lactobacillus ruminis; Lactobacillus vaginalis; Anaerostipes; Clostridium ramosum; Comamonadaceae; Etoh8; Veillonellaceae; Victivallaceae; Alistipes; Anaerobacterium; Bacteroides; Barnesiella; Olsenella; Parabacteroides; Porphyromonas; Ruminococcaceae; Anaerotruncus; Lactobacillus; Allobaculum; Clostridium sensu stricto; Clostridium_XI; Lactococcus; Ruminococcus; Anaeroplasma; Coriobacteriales; Alloprevotella; Turicibacter; Bifidobacteria; Pediococcus; Bacteroidaceae; Rikenellaceae RC9; TMAO-producing microbiota; Enterococcus; Escherichia coli; Enterococcaceae; Aerococcaceae; Moraxellaceae; Ruminococcaceae clostridium; Clostridium coccoides; Microbiota form wild-type and RELMB-KO mice; Sphingomonadaceae; Deferribacteres; Akkermansia muciniphila; Desulfovibrionaceae; Cyanobacteria; Acidobacteria; Coriobacteriaceae; Microbiota from mice fed a high-fat high-sucrose diet (HFHSD); Microbiota from mice fed a normal chow diet; Deferribacteria; Tenericutes; Lentisphaerae; Roseburia; Bilophila; Alcaligenaceae; Dehalobacteriaceae; Faecalibacterium; Lactobacillus johnsonii; Sutterella; Eubacterium; Gut microbiota in methionine-choline deficient (MCD) diet induced naSH; Oscillibacter,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Non-Alcoholic Fatty�Liver Disease (Increase),Acidobacteria; Bifidobacterium; Bilophila; Halomonas; Parabacteroides; Plesiomonas; Prevotella; Proteobacteria; Actinobacteria; Bacteroidetes; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Nosocomial infection (Increase),"Acinetobacter baumannii ATCC 19606, CIP 70.34; Acinetobacterlcoaceticus RUH2202; Enterococcus. 7L76; Acinetobacter radioresistens SK82",PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539.248; C23.550.291.875.50,NA,Whole Genome Sequencing,Increase
Obese (decrease_m),Allistipes; Bacteroides intestinalis; Bacteroides fragalis; Bacteroides uniformis; Bacteroides plebicus; Bacteroides ovatus; Bacteroides splachnicus; Bacteroides stercoris; Parabacteroides distasonis; Prevotella oralis; Prevotella ruminicola; Prevotella tannerai; Tannerella,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.654.726.500; C23.888.144.699.500,601665,16S rRNA - Human Intestinal Tractip Microarray,Decrease
Obese (decrease),Lactobacillus; Prevotella; F16; Clostridiaceae_02d06; Candidatus; Arthromitus; Allobaculum,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.654.726.500; C23.888.144.699.500,601665,"16S rRNA - V4 region, Roche 454 platform",Decrease
Obese (increase),Bacteroidetes S24_7; Anaeroplasma; Coprobacillus; Ruminococcaceae; Oscillospira; Ruminococcus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.654.726.500; C23.888.144.699.500,601665,"16S rRNA - V4 region, Roche 454 platform",Increase
Obesity (decrease ),Clostridia ; Enterobacteriaceae ; Gammaproteobacteria ; Bacteroidetes ; TM7 ; Verrucomicrobia ; Alistipes ; Bacteroidaceae ; Bacteroides ; Faecalibacterium ; Oscillibacter ; Porphyromonadaceae ; Rikenellaceae ; Oscillospiraceae ; Akkermansia muciniphila ; Candida sp. ; Faecalibacterium prausnitzii ; Saccharomyces sp. ; Akkermansia ; Anaerotruncus ; Coprobacillus ; Lentisphaerae ; Parabacteroides ; Bifidobacterium ; Barnesiella ; Turicibacter ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Obesity (decrease ),Clostridia ; Enterobacteriaceae ; Gammaproteobacteria ; Bacteroidetes ; TM7 ; Verrucomicrobia ; Alistipes ; Bacteroidaceae ; Bacteroides ; Faecalibacterium ; Oscillibacter ; Porphyromonadaceae ; Rikenellaceae ; Oscillospiraceae ; Akkermansia muciniphila ; Candida sp. ; Faecalibacterium prausnitzii ; Saccharomyces sp. ; Akkermansia ; Anaerotruncus ; Coprobacillus ; Lentisphaerae ; Parabacteroides ; Bifidobacterium ; Barnesiella ; Turicibacter ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Obesity (decrease),Bacteroidetes; Tenericutes; TM7 phyla; Clostridium hathewayi; Deferribacteres; Planctomycetes; Prevotella; Verrucomicrobia; Bifidobacterium; Akkermansia; Oscillospira; Sutterella; S24-7; Neisseria; Odoribacter; Paraprevotella; Streptococcus; Actinobacteria; Bacteroides; Bilophila; Faecalibacterium; Staphylococcaceae; Viridans�Streptococci; Blautia; Allobaculum; Lactobacillus rhamnosus BFE5264; Clostridiales; Clostridiaceae; Staphylococcus; Proteobacteria; Oscillibacter; Lachnospiraceae Nk4A136; Clostridium Xviii; Roseburia; Akkermansia muciniphila; Alistipes putredinis; Blautia luti; Clostridium; Faecalibacterium prausnitzii; Staphylococcus saprophyticus; Thiothrix; Bifidobacteria; Lactobacillus; Salmonella; Lactobacillus fermentum; Firmicutes; Helicobacter; Desulfovibrio; Butyricimonas; Parabacteroides; Rikenella; Ruminococcus; Coriobacteriaceae; Acidobacteria; Bacteroidaceae; Bacteroidia; Deltaproteobacteria; Desulfovibrionaceae; Enterobacteriaceae; Rikenellaceae; Bifidobacteriaceae; Erysipelotrichaceae; Escherichia coli; Anaerotruncus; Dorea; Lactococcus; Mucispirillum; Coprococcus; Escherichia; Sporosarcina; Bacteroidales,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Obesity (Denmark) (Increase),Bacteroides pectinophilus ATCC 43243; Ruminococcus gnavus ATCC 29149; Coprococcus sp. ART55; Clostridium clostridioforme; Coprococcus catus GD/7; Prevotella copri DSM 18205; Eubacterium biforme DSM 3989; Bilophila wadsworthia 3_1_6; Clostridium symbiosum WAL-14673; Clostridium symbiosum WAL-14163; Coprobacillus sp. D7; Clostridium ramosum DSM 1402; Ruminococcus torques ATCC 27756; Lachnospiraceae bacterium 8_1_57FAA; Methanobrevibacter smithii ATCC 35061; Methanobrevibacter smithii DSM 2374; Methanobrevibacter smithii DSM 2375; Methanobrevibacter smithii TS145A; Methanobrevibacter smithii TS145B; Methanobrevibacter smithii TS146A; Methanobrevibacter smithii TS146B; Methanobrevibacter smithii TS146C; Methanobrevibacter smithii TS146D; Methanobrevibacter smithii TS146E; Methanobrevibacter smithii TS147A; Methanobrevibacter smithii TS147B; Methanobrevibacter smithii TS147C; Methanobrevibacter smithii TS94A; Methanobrevibacter smithii TS94B; Methanobrevibacter smithii TS94C; Methanobrevibacter smithii TS95A; Methanobrevibacter smithii TS95B; Methanobrevibacter smithii TS95C; Methanobrevibacter smithii TS95D; Methanobrevibacter smithii TS96A; Methanobrevibacter smithii TS96B; Methanobrevibacter smithii TS96C; Faecalibacterium prausnitzii SL3; Faecalibacterium prausnitzii M21/2; Faecalibacterium cf. prausnitzii KLE1255; Faecalibacterium prausnitzii A2-165; Faecalibacterium prausnitzii L2-6,PubMed,1.6 - Disease Signature,Strain,NA,NA,C18.654.726.500; C23.888.144.699.500; E01.370.600.115.100.160.120.699.500; G07.100.100.160.120.699.500,601665,Whole Genome Sequencing - Illumina HiSeq 2000,Increase
Obesity (increase ),Prevotellaceae ; Faecalibacterium prausnitzii ; Firmicutes ; Enterobacteriaceae ; Prevotella ; Sutterellaceae ; Veillonellaceae ; Anaeroplasma ; Bifidobacterium ; Clostridium ; Turicibacter ; Blautia ; Collinsella ; Enterococcus ; Klebsiella ; Lactobacillus ; Sutterella ; Bacillus ; Escherichia/Shigella sp. ; Fusobacterium ; Proteobacteria ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Obesity (increase ),Prevotellaceae ; Faecalibacterium prausnitzii ; Firmicutes ; Enterobacteriaceae ; Prevotella ; Sutterellaceae ; Veillonellaceae ; Anaeroplasma ; Bifidobacterium ; Clostridium ; Turicibacter ; Blautia ; Collinsella ; Enterococcus ; Klebsiella ; Lactobacillus ; Sutterella ; Bacillus ; Escherichia/Shigella sp. ; Fusobacterium ; Proteobacteria ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Obesity (Increase),Acidobacteria; Firmicutes; Proteobacteria; Akkermansia; Blautia; Coprococcus; Lachnospiraceae; Moryella; Peptococcaceae; Roseburia; Ruminococcus; Helicobacter; Mucispirillum; Butyricicoccus; Clostridium perfringens; Bacillus; Clostridia; Prevotella; Treponema; Bifidobacterium; Lactobacillus; Parabacteroides; Akkermansia muciniphila; Deferribacteres; Staphylococcus; Desulfovibrionaceae; Aliihoeflea; Christensenellaceae R-7 Group; Desulfovibrio; Lactococcus; Bacteroidetes; Deferribacteria; Erysipelotrichaceae; Helicobacteraceae; Ruminococcaceae; Actinobacteria; Erysipelotrichi; Gammaproteobacteria; Citrobacter; Cronobacter; Enterobacteriaceae; Escherichia coli; Klebsiella; Microbiota form high fat diet raised mice; Bifidobacteria; Af12; Lactobacillaceae; Alistipes; Anaerotruncus; Dorea; Anaeroplasma; Bacteroides; Clostridiales; Microbiota form Western diet mice; Oscillospira; S24-7; Clostridium; Epsilonproteobacteria; Bifidobacteriaceae; Coriobacteriaceae; Escherichia; Streptococcus; Tenericutes; Sporosarcina,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Obesity (present ),Bacteroidetes ; Dialister ; Escherichia/Shigella sp. ; Sutterella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,present
Obesity (present ),Bacteroidetes ; Dialister ; Escherichia/Shigella sp. ; Sutterella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,present
Obesity and Insulin Resistance (decrease),Bacteroidetes; Heliocobacteraceae; Lachnospiraceae; Porphyromonadaceae; Rikenellaceae; Ruminococcaceae; Desulfovibrio; Lactobacillus plantarum Strain Ln4,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Obesity and Metabolic Diseases (decrease),Bifidobacterium; Clostridium; Clostridium IV; Alistipes; Alphaproteobacteria; Betaproteobacteria; Fusobacterium; Lachnospiraceae; Neisseria; Oscillibacter; Prevotella; Allobaculum; Bacteroides; Lactobacillus; Verrucomicrobia,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Obesity and Metabolic Diseases (Increase),Alistipes; Coprococcus; Mucispirillum schaedleri; Gammaproteobacteria; Selenomonas; Proteobacteria; Ruminococcus gnavus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Obesity and Non-Alcoholic Fatty Liver Disease (decrease),Clostridium; Gammaproteobacteria; Akkermansia muciniphila; Firmicutes,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Obesity; Metabolic Diseases (decrease ),Alistipes ; Bacteroides ; Blautia ; Clostridium IV ; Coprococcus ; Dorea ; Faecalibacterium ; Gemmiger ; Parabacteroides ; Parasutterella ; Romboutsia ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Obesity; Metabolic Diseases (decrease ),Alistipes ; Bacteroides ; Blautia ; Clostridium IV ; Coprococcus ; Dorea ; Faecalibacterium ; Gemmiger ; Parabacteroides ; Parasutterella ; Romboutsia ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Onset of obesity in children,Proteobacteria; Lactobacillaceae; Clostridiaceae; Ruminococcaceae; Alcaligenaceae; Ruminococcus; Sutterella,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.654.726.500; C23.888.144.699.500,601665,"16S rRNA � V3-V4 regions, Illumina MiSeq",NA
Opportunistic infection (Increase),"Capnocytophaga ochracea F0287; Clostridium ramosum VPI 0427, DSM 1402; Corynebacterium aurimucosum CN-1, ATCC 700975; Enterococcus faecalis TUSoD Ef11; Neisseriacca ATCC 29256; Fusobacterium. D11; Propionibacterium acidifaciens F0233; Propionibacterium. 5_U_42AFAA; Enterococcussseliflavus ATCC 12755; Enterococcus italicus DSM 15952; Propionibacterium propionicum F0230a; Propionimicrobium lymphophilum ACS-093-V-SCH5; Enterococcus faecium PC4.1; Proteus penneri ATCC 35198; Enterococcus. 7L76",PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539.597; C02.597; C03.684,NA,16S rRNA - Roche 454 platform,Increase
Oral infection (Increase),Candida glabrata CAB52-4041; Candida tropicalis CAB54-6763-3; Candida parapsilosis CAB50-2638; Prevotella bivia; Prevotella buccalis ATCC 35310; Prevotella disiens VPI 8057; Prevotella disiens; Prevotella melaninogenica ATCC 25845; Prevotella melaninogenica; Prevotella stercorea DSM 18206; Prevotella tannerae ATCC 51259; Prevotella oris F0302; Prevotella veroralis F0319; Corynebacterium matruchotii ATCC 14266; Corynebacterium macginleyi TBS-13; Corynebacterium pseudodiphtheriticum,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539,NA,Whole Genome Sequencing,Increase
Overweight Obese Mother (increase),Coriobacteriaceae; Erysipelotrichaceae; Lachnospiraceae; Ruminococcaceae,PubMed,1.1 - Anthropometric,Family,NA,NA,C18.654.726.500; C23.888.144.699.50,601665,"16S rRNA - V4 region, Illumina MiSeq",Increase
Pancreatic head carcinoma (decrease ),Enhydrobacter ; Escherichia ; Paenibacillus ; Porphyromonas ; Pseudomonas ; Shigella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pancreatic head carcinoma (decrease ),Enhydrobacter ; Escherichia ; Paenibacillus ; Porphyromonas ; Pseudomonas ; Shigella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pancreatic head carcinoma (increase ),Acinetobacter ; Aquabacterium ; Deinococcus ; Delftia ; Massilia ; Oceanobacillus ; Rahnella ; Sphingobium ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pancreatic head carcinoma (increase ),Acinetobacter ; Aquabacterium ; Deinococcus ; Delftia ; Massilia ; Oceanobacillus ; Rahnella ; Sphingobium ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pancreatic Neoplasms (decrease),Delftia; Enhydrobacter; Oceanobacillus; Paenibacillus; Porphyromonas; Rahnella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Pancreatic Neoplasms (Increase),Acidobacteria; Aquabacterium; Deinococcus; Escherichia; Massilia; Pseudomonas; Shigella; Bacteroidetes; Proteobacteria; Fusobacterium nucleatum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Pancreatic sufficiency; Cystic Fibrosis (increase ),Anaerotruncus ; Coriobacteriaceae ; Oscillospiraceae ; Ruminococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pancreatic sufficiency; Cystic Fibrosis (increase ),Anaerotruncus ; Coriobacteriaceae ; Oscillospiraceae ; Ruminococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pancreatitis (decrease ),Lachnospiraceae ; Oscillospiraceae ; Bacteroidetes ; Bifidobacterium ; Blautia ; Faecalibacterium ; Proteobacteria ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pancreatitis (decrease ),Lachnospiraceae ; Oscillospiraceae ; Bacteroidetes ; Bifidobacterium ; Blautia ; Faecalibacterium ; Proteobacteria ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pancreatitis (increase ),Blautia ; Enterococcaceae ; Enterococcus ; Escherichia/Shigella sp. ; Enterobacteriaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pancreatitis (increase ),Blautia ; Enterococcaceae ; Enterococcus ; Escherichia/Shigella sp. ; Enterobacteriaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Parasitic nematode infection (increase ),Akkermansia ; Akkermansia muciniphila ; Enterobacteriaceae ; Lactococcus ; Verrucomicrobiaceae ; Verrucomicrobiae ; Verrucomicrobiales ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Parasitic nematode infection (increase ),Akkermansia ; Akkermansia muciniphila ; Enterobacteriaceae ; Lactococcus ; Verrucomicrobiaceae ; Verrucomicrobiae ; Verrucomicrobiales ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Parkinson Disease (absent ),Clostridium perfringens ; Enterobacteriaceae ; Prevotella ; Pseudomonas ; Staphylococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,absent
Parkinson Disease (absent ),Clostridium perfringens ; Enterobacteriaceae ; Prevotella ; Pseudomonas ; Staphylococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,absent
Parkinson Disease (decrease ),Bacteroides fragilis ; Blautia coccoides ; Clostridium leptum ; Bacteroides ; Blautia glucerasea ; Candidatus Stoquefichus massiliensis ; Coprococcus eutactus ; Dorea ; Dorea longicatena ; Faecalibacterium ; Phocaeicola coprocola ; Phocaeicola dorei ; Phocaeicola massiliensis ; Phocaeicola plebeius ; Prevotella ; Prevotella copri ; Ruminococcus callidus ; Blautia ; Ruminococcus ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Parkinson Disease (decrease ),Bacteroides fragilis ; Blautia coccoides ; Clostridium leptum ; Bacteroides ; Blautia glucerasea ; Candidatus Stoquefichus massiliensis ; Coprococcus eutactus ; Dorea ; Dorea longicatena ; Faecalibacterium ; Phocaeicola coprocola ; Phocaeicola dorei ; Phocaeicola massiliensis ; Phocaeicola plebeius ; Prevotella ; Prevotella copri ; Ruminococcus callidus ; Blautia ; Ruminococcus ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Parkinson Disease (increase ),Lactobacillus ; Oscillospiraceae ; Bifidobacterium ; Christensenella ; Christensenella hongkongensis ; Christensenella minuta ; lactobacillus ; Limosilactobacillus mucosae ; Oscillospira ; Papillibacter cinnamivorans ; Ruminococcus bromii ; Barnesiellaceae ; Enterococcaceae ; Lachnospiraceae ; Enterococcus ; Escherichia/Shigella sp. ; Proteus ; Streptococcus ; Akkermansia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Parkinson Disease (increase ),Lactobacillus ; Oscillospiraceae ; Bifidobacterium ; Christensenella ; Christensenella hongkongensis ; Christensenella minuta ; lactobacillus ; Limosilactobacillus mucosae ; Oscillospira ; Papillibacter cinnamivorans ; Ruminococcus bromii ; Barnesiellaceae ; Enterococcaceae ; Lachnospiraceae ; Enterococcus ; Escherichia/Shigella sp. ; Proteus ; Streptococcus ; Akkermansia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Parkinson Disease (Increase),Actinobacteria; Alphaproteobacteria; Bacteroidetes; Betaproteobacteria; Erysipelotrichi; Clostridiales; Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Parkinson Disease (present ),Atopobium ; Bifidobacterium ; Enterococcus ; Lactobacillaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,present
Parkinson Disease (present ),Atopobium ; Bifidobacterium ; Enterococcus ; Lactobacillaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,present
Parkinsons (decreased),Haemophilus; Neisseria; Gemella; Rothia; Leptotrichia; Corynebacterium; Kingella; Actinomyces; Capnocytophaga; Moryella; Granulicatella,PubMed,1.6 - Disease Signature,Genus,NA,NA,C10.228.140.079.862.500; C10.228.662.600.400; C10.574.812,168600; 605909; 168601; 600116; 605543; 615528; 300557; 602404; 606852; 607060; 556500; 260300; 606324; 610297; 612953; 614203; 614251; 607688; 615530; 616710; 616840; 613643; 613164; 616361,"16S rRNA - V1-V3 regions, Illumina MiSeq",Decrease
Pediatric Crohn's Disease (Decrease),Bacteroides; Faecalibacterium; Roseburia; Blautia; Ruminococcus; Coprococcus; Faecalibacterium prausnitzii,PubMed,1.6 - Disease Signature,Genus,NA,NA,C06.405.205.731.500; C06.405.469.432.50,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,16S rRNA - Illumina MiSeq,Decrease
Pediatric Obesity (decrease ),Bacteroidaceae ; Bacteroidales ; Bacteroides ; Bacteroidetes ; Bacteroidia ; Dialister ; Phocaeicola vulgatus ; Pseudobutyrivibrio ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pediatric Obesity (increase ),Bifidobacterium ; Blautia ; Clostridia ; Eubacteriales ; Faecalibacterium ; Firmicutes ; Oscillospiraceae ; Subdoligranulum ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Periodontal Diseases (Increase),Bacteroidetes; Comamonadaceae; Euryarchaeota; Firmicutes; Lactobacillales; Prevotella; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Periodontal infection (Increase),Fusobacterium nucleatum nucleatum ATCC 23726; Parvimonas micra ATCC 33270; Fusobacterium nucleatum polymorphum F0401; Fusobacterium necrophorum funduliforme 1_1_36S; Fusobacterium nucleatum animalis F0419; Prevotella bivia; Prevotella buccalis ATCC 35310; Prevotella disiens VPI 8057; Prevotella disiens; Prevotella melaninogenica ATCC 25845; Prevotella melaninogenica; Prevotella stercorea DSM 18206; Prevotella tannerae ATCC 51259; Prevotella oris F0302; Prevotella veroralis F0319; Capnocytophaga ochracea F0287; Actinomyces graevenitzii C83; Actinomyces viscosus C505,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539.392.433; C07.793.348,NA,Whole Genome Sequencing,Increase
Periodontitis (increase),Porphyromonas; Treponema; Tannerella; Peptostreptococcus; Synergistes; Filifactor; Mycoplasma; Olsenella,PubMed,1.6 - Disease Signature,Genus,NA,NA,C07.465.714.533,NA,16S rRNA - Whole Genome Sequencing,Increase
Peritonitis (Increase),"Atopobium rimae ATCC 49626; Selenomonas sputigena ATCC 35185; Campylobacter rectus RM3267, CCUG 20446; Campylobacterowae RM3277; Capnocytophaga gingivalis ATCC 33624; Capnocytophagautigena Capno, ATCC 33612; Eikenella corrodens ATCC 23834; Fusobacterium periodonticum ATCC 33693",PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539.463.600; C06.844.64,NA,Whole Genome Sequencing,Increase
Phenylketonuria (decrease ),Clostridiaceae ; Coprococcus ; Dorea ; Erysipelotrichaceae ; Lachnospira ; Lachnospiraceae ; Odoribacter ; Ruminococcus ; Veillonella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Phenylketonurias (decrease),Clostridiaceae; Coprococcus; Dorea; Erysipelotrichaceae; Lachnospira; Lachnospiraceae; Odoribacter; Ruminococcus; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Pneumonia (Increase),"Staphylococcus aureus aureus TCH60; Staphylococcus aureus aureus TCH70; Staphylococcus aureus aureus TCH130; Staphylococcus aureus aureus USA300_TCH959; Staphylococcus epidermidis SK135; Acinetobacter baumannii ATCC 19606, CIP 70.34",PubMed,1.6 - Disease Signature,Strain,NA,NA,C08.381.677; C08.730.610,263000,Whole Genome Sequencing,Increase
Polycystic Ovary Syndrome (absent ),Firmicutes ; Parabacteroides ; Proteobacteria ; Ruminococcus ; Sutterella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,absent
Polycystic Ovary Syndrome (present ),Bacteroides ; Bacteroidetes ; Dialister ; Faecalibacterium ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,present
"Polyposis Syndrome, Hereditary Mixed, 1 (increase )",Akkermansia muciniphila ; Bacteroides ; Phocaeicola plebeius ; Enterobacteriaceae ; Fusobacterium sp. ; Lactobacillus ; Pantoea agglomerans ; Parvimonas ; Parvimonas micra ATCC 33270 ; Peptostreptococcus anaerobius ; Porphyromonas ; Porphyromonas asaccharolytica DSM 20707 ; Ruminococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
"Porphyromonas gingivalis; Diabetes Mellitus, Experimental (increase )",Brevibacterium ; Corynebacterium ; Facklamia ; Staphylococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
"Porphyromonas gingivalis; Diet, High-Fat (decrease )",Dehalobacteriaceae ; Oscillospiraceae ; Proteobacteria ; Tenericutes ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
"Porphyromonas gingivalis; Diet, High-Fat (increase )",Alcaligenaceae ; Allobaculum ; Erysipelotrichaceae ; Faecalibaculum rodentium ; Lactobacillus johnsonii ; Limosilactobacillus reuteri ; Sutterella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Post Partum Gestational Diabetes (decrease),Ruminococcus; Fusobacteriaceae; Fusobacterium; Pseudomonadales,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C13.703.170; C18.452.394.750.448; C19.246.200,610582,"16S rRNA - V1-V2 regions, Illumina MiSeq",Decrease
Post Partum Gestational Diabetes (increase),Hafnia; Olsenella; Howardella; Dehalobacter; Collinsella; Clostridium_sensu_stricto; Actinobacteria; Clostridiaceae_1; Coriobacteriales; Coriobacteriaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C13.703.170; C18.452.394.750.448; C19.246.200,610582,"16S rRNA - V1-V2 regions, Illumina MiSeq",Increase
Postoperative delirium (decrease ),Anaeroplasma ; Anaeroplasmataceae ; Anaeroplasmatales ; Bifidobacteriales ; Desulfovibrio ; Mollicutes ; Oscillospiraceae ; Ruminiclostridium ; Tenericutes ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Postoperative delirium (increase ),Butyricimonas ; Clostridiaceae ; Gammaproteobacteria ; Rikenellaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
"Postoperative delirium; Surgical Procedures, Operative (decrease )",Anaeroplasma ; Anaeroplasmataceae ; Oscillospiraceae ; Ruminiclostridium ; uncultured Bacteroidales bacterium ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pouchitis (increase ),Clostridium ; Clostridium perfringens ; Eubacterium ; Ruminococcus gnavus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Pre-Eclampsia (Increase),Akkermansia; Faecalibacterium; Lachnospira; Clostridium; Veillonella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Pre-Eclampsia(developed late-onset); Obesity; Pregnant Women (increase ),Actinomyces ; Bifidobacterium ; Collinsella ; unclassified Erysipelotrichaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Precursor Cell Lymphoblastic Leukemia-Lymphoma (decrease ),Anaerostipes ; Coprococcus ; Lachnospiraceae ; Roseburia ; Ruminococcus2 ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Prediabetic State (Increase),Clostridium; Dorea; Ruminococcus; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Pregnant (decrease),Moryetta indoligenes; Neisseria zoodegmatis; Neisseria elongata; Haemophilus influenzae,PubMed,1.1 - Anthropometric,Mixed,NA,NA,M01.975.807,NA,"16S rRNA - V4 region, Illumina MiSeq",Decrease
Pregnant (increase),Enterococcus; Methylobacterium; Pseudomonas veronii; Pseudomonadaceae; Klebsiella; Enterobacter hormaechei; Dechloromonas; Herbaspirillum; Acidovorax; Diaphrobacter nitroeducens,PubMed,1.1 - Anthropometric,Mixed,NA,NA,M01.975.807,NA,"16S rRNA - V4 region, Illumina MiSeq",Increase
Preterm birth (g_increase),Streptosporangium; Roseovarius; Burkholderia; Anaeromyxobacter,PubMed,1.1 - Anthropometric,Genus,NA,NA,C13.703.420.491.500,NA,Whole Genome Sequencing - Illumina HiSeq 2500,Increase
Professional Athlete (decrease),Howardella; Escherichia_higella; Phasolarctobacterium; Bacteriodes; Turicibacter,PubMed,1.5 - Lifestyle,Genus,NA,NA,NA,NA,"16S rRNA - V4 region, Roche 454 FLX",Decrease
Professional Athlete (increase),Erysipelotrichaceae_Incertae_Sedis; Anaerotruncus; Parasutterella; Succinivibrio; Phasolarctobacterium; Lactobacillus; Escherichia_higella; Mogibacterium; Catabacter; Coriobacteriaceae_bacterium_WAL_18889; Clostridium; Ruminococcus; Allisonella,PubMed,1.5 - Lifestyle,Genus,NA,NA,NA,NA,"16S rRNA - V4 region, Roche 454 FLX",Increase
Pulmonary Arterial Hypertension (decrease ),Aerococcaceae ; Pasteurellaceae ; Syntrophomonadaceae ; Bacteroidaceae ; Bacteroidetes ; Chitinophagaceae ; Flavobacteriaceae ; Odoribacteraceae ; Porphyromonadaceae ; Prevotellaceae ; Rikenellaceae ; Saprospiraceae ; Sphingobacteriaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Pulmonary Arterial Hypertension (decrease),Akkermansia; Blautia; Butyrivibrio; Enterococcal phages; Eubacterium; Lachnospiraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,decrease
Pulmonary Arterial Hypertension (Increase),Bacteroides; Bifidobacteria; Coprococcus; Lactococcal phages,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Resistance to Immune Checkpoint Inhibitors (decrease),Prevotella; Clostridium. CAG:921; Prevotella CAG:617; Clostridium bolteae; Blautia; Proteobacteria; Bacteroides nordii; Parabacteroides distasonis,PubMed,1.9 - Drug Sensitivity,Mixed,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Decrease
Resistance to Immune Checkpoint Inhibitors (increase),Akkermansia muciniphila; Firmicutes; Eubacterium; Lachnospiraceae; Erysipelotrichaceae bacterium 5_2_54FAA; Cloacibacillus porcorum; Enterococcus faecium; Intestinimonas; Clostridiales; Alistipes; Bacteroides; Alistipes indistinctus; Prevotella,PubMed,1.9 - Drug Sensitivity,Mixed,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Resistance to PD-L1 monoclonal antibodies (decrease),Dorea; Ruminococcaceae; Butyricimonas; Peptococcaceae; Candidatus; Arthromitus; Ruminococcus; Adlercreutzia,PubMed,1.9 - Drug Sensitivity,Mixed,NA,NA,NA,NA,"16S rRNA - V4-V5 regions, Illumina MiSeq",Decrease
Resistance to PD-L1 monoclonal antibodies (increase),Bifidobacterium; Bacteroides; Turicibacter; Sutterella; Clostridiaceae; Allobaculum; Lactobacillus; Akkermansia,PubMed,1.9 - Drug Sensitivity,Mixed,NA,NA,NA,NA,"16S rRNA - V4-V5 regions, Illumina MiSeq",Increase
Rett Syndrome (absent ),Faecalibacterium prausnitzii ; Oscillospiraceae ; Prevotella ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,absent
Rett Syndrome (decrease),Alistipes; Bacteroides; Faecalibacterium; Gemmiger; Ruminococcus; Streptococcus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Rett Syndrome (Increase),Bifidobacterium; Blautia; Escherichia; Lachnospiraceae incertae sedis; Shigella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
"Rheumatoid arthritis (China, increase)",Prevotella tannerae; Treponema vincentii; Capnocytophaga ochracea; Selenomonas infelix; Gemella sanguinis; Eubacterium saphenum; Bifidobacterium dentium; Bulleidia extructa; Campylobacter rectus; Capnocytophaga gingivalis; Centipeda periodontii; Cryptobacterium curtum; Eikenella corrodens; Filifactor alocis; Fusobacterium nucleatum; Johnsonella ignava; Lachnospiraceae bacterium; Lactobacillus salivarius; Neisseria macacae; Olsenella.OF0356; Peptostreptococcus stomatis; Porphyromonas gingivalis; Prevotella intermedia; Prevotella maculosa; Prevotella nigrescens; Prevotella oralis; Prevotella salivae; Pseudoramibacter alactolyticus; Streptococcus mutans; Tannerella forsythensis,PubMed,1.6 - Disease Signature,Species,NA,NA,C05.550.114.154; C05.799.114; C17.300.775.099; C20.111.199,180300; 604302,Metagenomic shotgun sequencing - Illumina,Increase
"Rheumatoid arthritis (China, increased)",Porphyromonas gingivalis; Peptostreptococcus stomatis; Selenomonas sputigena; Prevotella salivae; Prevotella intermedia; Tannerella forsythensis; Kingella denitrificans; Rothia aeria; Prevotella oulorum; Campylobacter rectus; Actinomyces naeslundii; Atopobium parvulum; Cardiobacterium hominis; Corynebacterium matruchotii; Cryptobacterium curtum; Filifactor alocis; Lactobacillus salivarius; Leptotrichia wadei; Olsenella uli; Parvimonas micra; Prevotella histicola; Prevotella veroralis; Selenomonas flueggei; Slackia exigua; Solobacterium moorei; Streptococcus parasanguinis; Streptococcus sanguinis,PubMed,1.6 - Disease Signature,Species,NA,NA,C05.550.114.154; C05.799.114; C17.300.775.099; C20.111.199,180300; 604302,Metagenomic shotgun sequencing - Illumina,Increase
Rheumatoid arthritis (China) (Increase),Bacteroides vulgatus; Bifidobacterium bifidum; Bifidobacterium dentium; Clostridium asparagiforme; Clostridium leptum; Coprococcus catus; Dialister invisus; Eggerthella lenta; Enterobacteroacae; Gordonibacter pamelaeae; Holdemania filiformis; Klebsiella pneumoniae; Lachnospiraceae bacterium; Lactobacillus sanfranciscensis; Megamonas hypermegale; Parabacteroides johnsonii; Roseburia intestinalis; Ruminococcus lactaris; Blautia obeum; Sutterella wadsworthensis; Bacteroides plebeius; Bacteroides. 20_3,PubMed,1.6 - Disease Signature,Strain,NA,NA,C05.550.114.154; C05.799.114; C17.300.775.099; C20.111.199,180300; 604302,Metagenomic shotgun sequencing - Illumina,Increase
Schizophrenia (decrease),Bifidobacterium; Basfia; Aggregatibacter; Capnocytophaga; Pasteurella; Mannheimia; Neisseria; Actinobacillus,PubMed,1.6 - Disease Signature,Genus,NA,NA,F03.700.750,NA,"16S rRNA - V1 - V4, Illumina HiSeq 2000 platform",Decrease
Schizophrenia (increase),Lactobacillus gasseri; Catenibacterium mitsuokai; Candida dubliniensis; Eubacterium hallii; Lactobacillus salivarius; Bifidobacterium pseudocatenulatum; Streptococcus gordonii; Streptococcus thermophilus,PubMed,1.6 - Disease Signature,Genus,NA,NA,F03.700.750,NA,"16S rRNA - V1 - V4, Illumina HiSeq 2000 platform",Increase
Sepsis-Associated Encephalopathy (decrease),Bacteroides; Bifidobacterium; Clostridium; Enterobacter; Enterococcus; Lactobacillus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Septicemia (Increase),Proteus penneri ATCC 35198; Providenciauartii ATCC 25827; Edwardsiella tarda ATCC 23685; Campylobacterli JV20; Campylobacter upsaliensis JV21,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.252.100.375; C01.252.400.700.662.297; C01.539.757.100.375; C23.550.470.790.500.100.375,NA,Whole Genome Sequencing,Increase
Severe pain and Chronic morphine treatment (Increase),Bacillaceae; Enterobacteriaceae; Erysipelotrichaceae; Staphylococcaceae; Streptococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Sex (Increase),Bifidobacterium longum; Collinsella aerofaciens; Eggerthella unclassified; Gordonibacter pamelaeae; Bacteroidales bacterium ph8; Paraprevotella unclassified; Alistipes onderdonkii; Lachnospiraceae bacterium 3 1 57FAA CT1; Lachnospiraceae bacterium 5 1 63FAA; Lachnospiraceae bacterium 7 1 58FAA; Subdoligranulum unclassified; Bilophila unclassified; Akkermansia muciniphila,PubMed,1.1 - Anthropometric,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Short Bowel Syndrome (decrease),Firmicutes; Erysipelotrichaceae; Lachnospiraceae; Lactobacillus; Peptostreptococcaceae; Ruminococcaceae; Streptococcus; Actinobacteria; Bacteroidetes; Enterobacteriaceae; Anaerotruncus; Clostridium; Desulfovibrio; Peptostreptococcus; Ruminococcus; Subdoligranulum,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Short Bowel Syndrome (Increase),Enterobacteriaceae; Lactobacillaceae; Proteobacteria; Aggregatibacter; Enterococcus; Escherichia; Firmicutes; Fusobacterium; Haemophilus; Lachnoanaerobaculum; Morganella; Neisseria; Porphyromonas; Veillonella; Veillonellaceae; Acidaminococcus; Mitsuokella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Sjogren Syndrome (decrease),Bacteroides; Clostridiales; Faecalibacterium; Prevotella; Ruminococcaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Sleep Deprivation (increase ),Akkermansia ; Bacteroides ; Bacteroidetes ; Faecalibacterium ; Firmicutes ; Gammaproteobacteria ; Lachnospiraceae ; Moraxellaceae ; Streptococcaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Sleep Deprivation; Vasoplegia (increase ),Clostridia ; Eubacteriales ; Enterobacterales ; Escherichia/Shigella sp. ; Firmicutes ; Gammaproteobacteria ; Phocaeicola dorei ; Proteobacteria ; Streptococcus ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Spinal Cord Injuries (decrease ),Dialister ; Marvinbryantia ; Megamonas ; Pseudobutyrivibrio ; Roseburia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
"Spondylitis, Ankylosing (decrease )",Alloprevotella ; Anaerotruncus ; Bifidobacterium ; Eubacterium ; Turicibacter ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
"Spondylitis, Ankylosing (increase )",Butyricicoccus ; Clostridium XlVa ; Odoribacter ; Parabacteroides ; Rikenella ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Stomach Neoplasms (decrease),Bacteroidetes; Fusobacteria; Helicobacter pylori; Peptostreptococcus; Prevotella,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Stomach Neoplasms (increase ),Achromobacter ; Citrobacter ; Clostridium ; Enterobacteriaceae ; Lactobacillus ; Phyllobacterium ; Rhodococcus ; Xanthomonadaceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Stomach Neoplasms (Increase),Dialister pneumosintes; Parvimonas micra; Peptostreptococcus; Slackia exigua; Streptococcus anginosus; Actinobacteria; Firmicutes; Helicobacter pylori,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Stroke (decrease),Bacteroidetes; Enterococcaceae; Faecalibacterium; Lachnospira; Megasphaera; Proteobacteria; Roseburia; TMAO-producing microbiota,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Stroke (Increase),Acidaminococcus; Lachnospiraceae; Oscillospira; Ruminococcaceae; Sutterella; Veillonella; Veillonellaceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Subchronic Cd exposure (decrease),Bacteroidetes; Paraprevotellaceae; Proteobacteria,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,decrease
Subchronic Cd exposure (Increase),Firmicutes; Helicobacteraceae,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Sudden Infant Death (Increase),Bacteroides thetaiotaomicron; Clostridium difficile; Clostridium innocuum; Staphylococcus aureus,PubMed,1.6 - Disease Signature,mixed,NA,NA,NA,NA,16s rRNA gene sequencing,Increase
Symptomatic atherosclerosis (decrease),Eubacterium; Roseburia; Bacteroides. 1_1_30; Bacteroides xylanisolvens XB1A; Bacteroides. 1_1_14,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C14.907.137.126.307,108725,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Decrease
Third Trimester Gestational Diabetes (increase),Mogibacterium; Actinomyces; Leuconostocaceae; Actinomycetales; Leuconostoc; Granulicatella; Desulfovibrio; Micrococcaceae; Rothia; Collinsella; Coriobacteriales; Coriobacteriaceae; Actinobacteria,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C13.703.170; C18.452.394.750.448; C19.246.200,610582,"16S rRNA - V1-V2 regions, Illumina MiSeq",Increase
Triglyceride (TG) (Increase),Eggerthella lenta; Bacteroides cellulosilyticus; Bacteroides uniformis; Bacteroides vulgatus; Bacteroidales bacterium ph8; Barnesiella intestinihominis; Parabacteroides merdae; Alistipes putredinis; Alistipes shahii; Blautia hydrogenotrophica; Ruminococcus torques; Coprococcus ART55 1; Lachnospiraceae bacterium 8 1 57FAA; Roseburia hominis; Anaerotruncus unclassified; Subdoligranulum unclassified,PubMed,1.4 - Health,Species,NA,NA,NA,NA,Metagenomic shotgun sequencing - Illumina HiSeq 2000,Increase
Type 1 Diabetes (g_decrease),Prevotella; B. Coccoides-E rectalle; Bifidobacterium; Lactobacillus,PubMed,1.6 - Disease Signature,Genus,NA,NA,C18.452.394.750.124; C19.246.267; C20.111.327,NA,"16S rRNA - V2-V3 regions, real-time qPCR, LightCycler 2.0 PCR sequence detection system",Decrease
"Type 2 Diabetes (Chinese, decrease)",Clostradiales. SS3/4; Eubacterium rectale; Faecalibacterium prausnitzii; Haemophilus parainfluenzae; Roseburia intestinalis; Roseburia inulinivorans; Eubacterium; Faecalibacterium; Erysipelotrichaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.452.394.750.149; C19.246.300,125853,"16S rRNA - Whole Genome Sequencing, Illumina HiSeq",Decrease
"Type 2 Diabetes (Chinese, increase)",Akkermansia muciniphila; Bacteroides intestinalis; Bacteroides. 20 3; Clostridium bolteae; Clostridium hathewayi; Clostridium ramosum; Clostridium. HGF2; Clostridium symbiosum; Desulfovibrio. 3 1n3; Eggerthella lenta; Escherichiali; Alistipes; Clostridium; Parabacteroides; Subdoligranulum; Lachnospriaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.452.394.750.149; C19.246.300,125853,"16S rRNA - Whole Genome Sequencing, Illumina HiSeq",Increase
Type 2 Diabetes (Chinese) (Increase),Lactobacillus amylolyticus DSM 11664; Lactobacillus amylovorus GRL 1112; Lactobacillus oris PB013-T2-3; Enterococcus faecalis TX0102; Parascardovia denticolens F0305; Lactobacillus oris F0423; Lactobacillus antri DSM 16041; Pediococcus acidilactici 7_4; Lactobacillus vaginalis ATCC 49540; Scardovia inopinata F0304; Enterococcus faecalis TX0411; Lactobacillus paracasei subsp. paracasei 8700:2; Lactobacillus brevis subsp. gravesensis ATCC 27305; Akkermansia muciniphila ATCC BAA-835; Bifidobacterium breve UCC2003; Escherichia coli IHE3034; Clostridium ramosum DSM 1402; Eggerthella sp. HGA1; Eggerthella lenta DSM 2243; Clostridium sporogenes ATCC 15579; Lactobacillus helveticus DSM 20075; Clostridium bolteae ATCC BAA-613; Streptococcus anginosus SK52; Streptococcus anginosus F0211; Bacteroides sp. 3_2_5; Parabacteroides distasonis ATCC 8503; Streptococcus anginosus 1_2_62CV; Eggerthella sp. 1_3_56FAA; Megasphaera sp. UPII 199-6; Finegoldia magna ATCC 53516; Bacteroides sp. 2_1_7; Lactobacillus reuteri SD2112; Eggerthella sp. YY7918; Acidaminococcus sp. D21; Enterococcus casseliflavus ATCC 12755; Bacteroides sp. 20_3; Coprobacillus sp. 29_1; Acidaminococcus fermentans DSM 20731; Pseudoramibacter alactolyticus ATCC 23263; Bacteroides sp. 2_1_33B; Corynebacterium glucuronolyticum ATCC 51866; Eubacterium limosum KIST612; Lactobacillus johnsonii DPC 6026; Parabacteroides sp. D13; Coprobacillus sp. D7; Xanthomonas oryzae pv. oryzae MAFF 311018; Lactobacillus johnsonii ATCC 33200; Lactobacillus reuteri JCM 1112; Lactobacillus johnsonii FI9785; Lactobacillus johnsonii NCC 533; Lactobacillus reuteri MM4-1A; Lactobacillus delbrueckii subsp. lactis DSM 20072; Lactobacillus jensenii 269-3; Lactobacillus reuteri DSM 20016; Lactobacillus gasseri SV-16A-US; Lactobacillus amylovorus GRL1118; Corynebacterium jeikeium K411; Lactobacillus helveticus DPC 4571; Lactobacillus jensenii 27-2-CHN; Lactobacillus gasseri SJ-9E-US; Enterococcus faecalis ATCC 29200; Lactobacillus jensenii 1153; Lactobacillus ultunensis DSM 16047; Lactobacillus jensenii 208-1; Lactobacillus reuteri MM2-3; Lactobacillus crispatus 214-1; Lactobacillus crispatus MV-1A-US; Finegoldia magna ATCC 29328; Lactobacillus jensenii SJ-7A-US; Lactobacillus gasseri MV-22; Lactobacillus coleohominis 101-4-CHN; Psychrobacter arcticus 273-4; Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4; Lactobacillus acidophilus ATCC 4796; Haemophilus influenzae F3031; Haemophilus influenzae Rd KW20; Haemophilus influenzae R2866; Campylobacter concisus 13826; Haemophilus influenzae PittGG; Haemophilus influenzae R2846; Haemophilus aegyptius ATCC 11116; Haemophilus parainfluenzae T3T1; Haemophilus parainfluenzae ATCC 33392; Haemophilus influenzae PittEE; Veillonella sp. oral taxon 158 str. F0412; Haemophilus influenzae 10810; Aggregatibacter aphrophilus NJ8700; Haemophilus influenzae F3047; Roseburia inulinivorans DSM 16841; Eubacterium rectale ATCC 33656; Campylobacter gracilis RM3268; Aggregatibacter segnis ATCC 33393; butyrate-producing bacterium SS3/4; Clostridium sp. SS2/1; Roseburia intestinalis XB6B4; Eubacterium rectale; butyrate-producing bacterium SSC/2; Actinobacillus succinogenes 130Z; Roseburia intestinalis L1-82; Lachnospiraceae bacterium 5_1_63FAA; Prevotella melaninogenica D18; Actinobacillus ureae ATCC 25976; Faecalibacterium cf. prausnitzii KLE1255; Butyrivibrio crossotus DSM 2876; Butyrivibrio fibrisolvens; Actinomyces sp. oral taxon 178 str. F0338; Clostridium phytofermentans ISDg; Gemella haemolysans ATCC 10379; Oribacterium sinus F0268; Butyrivibrio proteoclasticus B316; Faecalibacterium prausnitzii L2-6; Oribacterium sp. oral taxon 108 str. F0425; Coprococcus eutactus ATCC 27759; Streptococcus sanguinis VMC66; Clostridium hylemonae DSM 15053; Bacteroides pectinophilus ATCC 43243,PubMed,1.6 - Disease Signature,Strain,NA,NA,C18.452.394.750.149; C19.246.300,125853,Whole Genome Sequencing,Increase
Type 2 Diabetes (Sweden) (Increase),Lactobacillus gasseri JV-V03; Lactobacillus gasseri SJ-9E-US; Lactobacillus gasseri 202-4; Lactobacillus salivarius ACS-116-V-Col5a; Desulfurispirillum indicum S5; Clostridium beijerinckii NCIMB 8052; Clostridium sp. 7_2_43FAA; Clostridium botulinum B str. Eklund 17B; Clostridium botulinum E3 str. Alaska E43; Pyramidobacter piscolens W5455; Clostridium thermocellum DSM 1313;,PubMed,1.6 - Disease Signature,Strain,NA,NA,C18.452.394.750.149; C19.246.300,125853,Whole Genome Sequencing - Illumina HiSeq 2000,Increase
Type I Diabetes (decreased),Eubacterium; Faecalibacterium; Odoribacter; Veillonella,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.452.394.750.124; C19.246.267; C20.111.327,NA,16S rRNA - V3 Roche 454 FLX,Decrease
Type I Diabetes (increased),Alistipes; Bacteroides; Blautia; Clostridium; Enterobacter; Escherichia; Fusobacterium; Granulicatella; Lactobacillus; Parabacteroides; Roseburia; Ruminococcus; Streptococcus,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C18.452.394.750.124; C19.246.267; C20.111.327,NA,16S rRNA - V3 Roche 454 FLX,Increase
Ual-specificity phosphatases deficiency; Obesity (decrease ),Deferribacteres ; Erysipelotrichaceae ; Firmicutes ; Lachnospiraceae ; Oscillospiraceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Ual-specificity phosphatases deficiency; Obesity (increase ),Actinobacteria ; Bacteroidaceae ; Bacteroidetes ; Muribaculaceae ; Proteobacteria ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Ulcerative Colitis (increase),Escherichia; Streptococcus; Sutterella; Veillonella,PubMed,1.6 - Disease Signature,Genus,NA,NA,C06.405.205.265.231; C06.405.205.731.249; C06.405.469.158.188.231; C06.405.469.432.249,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,"16S rRNA - V3-V4 regions, Illumina MiSeq",Increase
Ulcerative Colitis (increased),Rhodococcus erythropolis; Faecalibacterium prausnitzii; Roseburia hominis; Ruminoccus torques; Campylobacter concisus,PubMed,1.6 - Disease Signature,Species,NA,NA,C06.405.205.265.231; C06.405.205.731.249; C06.405.469.158.188.231; C06.405.469.432.249,266600; 604519; 612566; 612241; 606668; 612288; 601458; 612244; 612245; 612567; 612278; 612259; 605225; 606348; 608448; 612381,"16S rRNA - V4-V5 region, ABI PRISM 3700 DNA analyzer",Increase
Ulcerative colitis at exacerbated stage (decrease ),Achromobacter ; Ochrobactrum ; Pseudomonas ; Stenotrophomonas ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Ulcerative colitis at remission stage (decrease ),Achromobacter ; Dialister ; Faecalibacterium ; Megasphaera ; Ochrobactrum ; Oscillospira ; Prevotella ; Pseudomonas ; Roseburia ; Stenotrophomonas ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Untreated Multiple Sclerosis (decrease ),Collinsella ; Sarcina ; Butyricimonas ; Prevotella ; Slackia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Untreated Multiple Sclerosis (increase ),Prevotella ; Sutterella ; Akkermansia ; Euryarchaeota ; Methanobrevibacter ; Verrucomicrobia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase
Upper motor neuron bowel syndrome; Spinal Cord Injuries (decrease ),Dialister ; Megamonas ; Pseudobutyrivibrio ; Marvinbryantia ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Urinary Infection (Increase),Enterococcus faecalis HH22; Enterococcus faecalis TX0104; Enterococcus faecium DO; Enterococcus faecalis S613; Enterococcus faecalis R712,PubMed,1.6 - Disease Signature,Strain,NA,NA,C01.539.895; C12.777.892; C13.351.968.892,NA,Whole Genome Sequencing,Increase
Urogenital schistosomiasis (decreased),Subdoligranulum; Parabacteroides; Erysipelotrichaceae; Ruminococcaceae; Peptostreptococcaceae; Clostridium; Mollicutes,PubMed,1.6 - Disease Signature,Mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Decrease
Urogenital schistosomiasis (increased),Megasphaera; Dialister; Acinetobacter; Prevotella; Alloprevotella; Desulfovibrio; Haemophilus; Peptococcus; Olsenella; Coriobacteriaceae,PubMed,1.6 - Disease Signature,Mixed,NA,NA,NA,NA,16S rRNA � V4 region � Illumina MiSeq,Increase
Uveitis (decrease),Lachnospiraceae; Roseburia; ClostridiumXI; Peptostreptococcaceae; Lachnospiraceae_incertae_sedis; Pusillimonas; Clostridium sensu stricto; Clostridiaceae1; Blautia; Desemzia; Barnesiella; Symbiobacterium; Tepidimicrobium; Thermovum; Clostridiales_IncertaeSedisXVIII; Dorea; Odoribacter; Carnobacteriaceae; Granulicatella; Halanaerobiales; Clostridiales_IncertaeSedisIII; ClostridiumIII; Ureibacillus; Halocella; Alcaligenaceae; Halanaerobiaceae; Tepidanaerobacter; Methanomicrobiales; Desulfobulbaceae; Sporosarcina; Desulfobulbus; Desulfobacterales; Planococcaceae; Pseudomonas; ClostridiumXVIII; Pseudomonadaceae; Erysipelotrichaceae_incertae_sedis,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C11.941.879,NA,"16S rRNA - V3-V4 regions, Illumina HiSeq",Decrease
Uveitis (increase),Pseudoxanthomonas; Deinococcus_Thermus; Deinococci; Clostridiales_IncertaeSedisXI; Selenomonas; Halomonas; Oceanospirillales; Halomonadaceae; Burkholderia; Paraprevotella; Veilonella; Negativicutes; Selenomonadales,PubMed,1.6 - Disease Signature,Mixed,NA,NA,C11.941.879,NA,"16S rRNA - V3-V4 regions, Illumina HiSeq",Increase
Young; Chronic Disease (decrease ),Blautia ; Christensenellaceae ; Oscillospira ; Oscillospiraceae ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,decrease
Young; Chronic Disease (increase ),Anaerotruncus ; Bacteroidetes ; Clostridiaceae ; Clostridium ; Deferribacteres ; Eggerthella ; Enterobacteriaceae ; Mucispirillum ; Sarcina ,PubMed,1.6 - Disease Signature,,NA,NA,,NA,NA,increase